Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq255 107 2e-18 seq188 86.0 5e-12 >seq255 Length=939575 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| |||| || ||||||||||| ||| ||| | || Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || ||||| |||||| || |||||||| | || |||||| Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || |||||| | ||||| || || | |||| ||||| Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 828009 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||||||||||||| | || | ||| | || ||||| Sbjct 828010 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCGACTTCGTGGAGG 828056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || |||||| ||| | | |||||||| || |||||| | ||| Sbjct 827695 GATAAAGAAGGCATTCCTCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAACTCGAA 827754 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || | |||| ||||| || ||||||||||||||||||||| | || | Sbjct 827755 GACGGCAGGACACTCTCCGACTACAACATCCAAAAGGAATCTACTCTTCACTTAGTTCTT 827814 Query 25248 CGATTACGAGGAGG 25261 ||| | || ||||| Sbjct 827815 CGACTTCGTGGAGG 827828 >seq188 Length=1630868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 124103 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 124162 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 124163 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 124222 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || | |||||||| || ||||| | || ||| | ||| | | || ||||| Sbjct 124223 GCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAA 124282 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||| || |||||||||||||| |||| Sbjct 124283 TATTCAGAAAGAATCTACTCTTCATTTGGT 124312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| |||||| |||| || | || || || ||||| ||| ||| ||| || | Sbjct 123647 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123706 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | || | || |||||| ||||| ||||| | || |||||| Sbjct 123707 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123766 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || | |||||||| || ||||| | || ||| | ||| | | || || || Sbjct 123767 GCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAA 123826 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||| || |||||||||||||| |||| Sbjct 123827 TATTCAGAAAGAATCTACTCTTCATTTGGT 123856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410786906986064