Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq211 143 3e-29 seq255 111 2e-19 seq771 93.3 4e-14 seq188 82.4 8e-11 >seq211 Length=255845 Score = 143 bits (158), Expect = 3e-29 Identities = 296/437 (68%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 116733 ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCA 116792 |||| || ||||| || || || |||| ||||| || || || || || |||| Sbjct 251790 ACGAACGTCATTTTATATCCCATGTATTGGCGTTTTTTGCAGCATCAGATGGTATTGTCA 251849 Query 116793 ACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCT 116852 | |||||||| || || || ||| ||| || || || || | || || |||||||||| Sbjct 251850 ATGAGAATCTAGTAGAACGGTTCAGTCAAGAAGTCCAAGTAACGGAAGCACGGTGCTTCT 251909 Query 116853 ACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACA 116912 | || ||||| || || || || || || ||||| ||||||||||| ||| || ||| Sbjct 251910 ATGGTTTTCAAATAGCAATTGAAAATGTACACTCAGAAATGTATTCCCTCCTTATAAACA 251969 Query 116913 CGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGT 116972 | | | | | | | || |||| | | | || || |||||||||| | || | Sbjct 251970 CATTCATCAGTAATGCCGAAGAGAGGGATTTTCTCTTCAATGCCATCGAGAATCTTCCCT 252029 Query 116973 GCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCA-GAGA-GGCCGCCTT 117030 |||| | || ||| | ||||| | ||||| | ||| || | || | || Sbjct 252030 GCGTTGCTAAAAAAGCCAATTGGGCCTTAAATTGGATTTC--GCATGACACAGCAACTTT 252087 Query 117031 CGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGC 117090 | || || || | || ||||| || || || || ||||||| || |||||||| Sbjct 252088 TGCAGAACGTGTGATTGCGTTCGCAGCGGTAGAAGGAATCTTCTTCAGTGGTAGTTTCGC 252147 Query 117091 CGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCT 117150 || || |||||||| |||||||| || ||||||| || || || ||||||||||| | Sbjct 252148 TGCTATCTTTTGGCTGAAGAAACGTGGTATCATGCCTGGACTTACATTCAGCAACGAATT 252207 Query 117151 CATCTCCAGGGACGAGG 117167 || ||||| || |||| Sbjct 252208 AATTTCCAGAGATGAGG 252224 >seq255 Length=939575 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || |||||||| || | || || ||||| | Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||| | |||||| ||||||| |||||||| ||||| || | || || Sbjct 827890 GATACGATTGAAAATG-TCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 827948 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||| || || |||| | || ||| ||||||||| Sbjct 827949 GCAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAA 828008 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| | || || || |||| Sbjct 828009 CATCCAAAAGGAATCTACTCTTCACTTAGT 828038 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||| ||||| | || || ||||| | Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||| | |||| | ||||||| |||||||| ||||||||| | || || Sbjct 828284 GATACGATTGAAAATG-TCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCA 828342 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || || | ||| |||||||||||||| |||| | || || || || || Sbjct 828343 ACAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAA 828402 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || | || || || | || | || |||||||| || Sbjct 828403 TATTCAGAAAGAATCAACCCTTCACTTGGTACTTCGTTTGAGGGGTGG 828450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || ||||||||||| |||| |||||||| | Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | || || | || ||||| ||||| || | || ||| Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || ||||| || || |||| | || ||| |||||||||| Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 827781 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || || |||| Sbjct 827782 ATCCAAAAGGAATCTACTCTTCACTTAGT 827810 >seq771 Length=410761 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || |||||||| || |||||| | || || || || | Sbjct 280231 AATGCAGATCTTCGTGAAGACCCTAACGGGCAAGACTATCACCCTTGAGGTTGAGGCTTC 280172 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||| | |||| || || | ||||| || || ||||| |||| || Sbjct 280171 CGATACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGATCA 280112 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| |||||||| || | || || | |||||| || Sbjct 280111 ACAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACATTATCCGACTATAA 280052 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 280051 CATCCAGAA 280043 >seq188 Length=1630868 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || |||||| | || || ||||| |||||| | || || || || | Sbjct 124331 AATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTC 124390 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 124391 TGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCA 124450 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | || || || || || || || | || || ||| |||||||| Sbjct 124451 GCAGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAA 124510 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || | || || || |||| | || | ||||| || Sbjct 124511 TATCCAAAAAGAATCAACTCTTCACTTAGTTCTTCGACTTAGGGGTGG 124558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206474085760