Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq188 102 7e-17 seq255 100 2e-16 >seq188 Length=1630868 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 ||||| || | ||||| ||||| ||||| ||||| || | | || || || |||||| Sbjct 124312 ACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAAT-GTTCGGCCATCCTC 124254 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||||||||| |||| | | ||||||||| || || || || ||||| ||| Sbjct 124253 AAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTG 124194 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||| | | || || || | ||| | || || Sbjct 124193 AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTT 124134 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || |||||||| Sbjct 124133 TCCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 ||||| || | ||||| ||||| ||||| || || || | | || || || |||||| Sbjct 123856 ACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAAT-GTTCGGCCATCCTC 123798 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||||||||| |||| | | ||||||||| || || || || ||||| ||| Sbjct 123797 AAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTG 123738 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||| | | || || || | ||| | || || Sbjct 123737 AATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTT 123678 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || |||||||| Sbjct 123677 TCCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||||||||| | ||| || ||| || || || |||||| Sbjct 122932 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 122873 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| || || || || ||||| ||| |||||| ||| Sbjct 122872 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 122813 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | || || | ||| ||| ||||| | ||| | || || || |||| ||| Sbjct 122812 ACATTTTCAATCGTATCAGATGC-CTCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGT 122754 Query 118721 TTTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 122753 CTTCACGAAAATCTGCATG 122735 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||||||||| | |||||| || || || || |||||| Sbjct 124072 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCA 124013 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || || || |||||| |||||| || Sbjct 124012 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTC 123953 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||||| | ||| ||| || || | ||| | ||||||||| || | || Sbjct 123952 ACATTTTCTATCGTGTCGGATGC-CTCAACTTCAAGGGTGATCGTTTTGCCAGTTAACGT 123894 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| ||||| |||||||| Sbjct 123893 TTTAACAAAGATCTGCAT 123876 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||||||||| | ||| || ||| || || || |||||| Sbjct 123160 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 123101 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| || || || || ||||| ||| |||||| ||| Sbjct 123100 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 123041 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | | || || || | ||| | || || || || ||||| Sbjct 123040 ACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTC 122981 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 122980 TTGACGAATATCTGCAT 122964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||||||||| | ||| || ||| || || || |||||| Sbjct 123388 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 123329 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| || || || || ||||| ||| |||||| ||| Sbjct 123328 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 123269 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | | || || || | ||| | || || || || ||||| Sbjct 123268 ACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTC 123209 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 123208 TTGACGAATATCTGCAT 123192 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || |||||||||||||| | ||| || ||| || || || |||||| Sbjct 123616 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 123557 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| || || || || ||||| ||| |||||| ||| Sbjct 123556 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 123497 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | | || || || | ||| | || || || || ||||| Sbjct 123496 ACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTC 123437 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 123436 TTGACGAATATCTGCAT 123420 >seq255 Length=939575 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || | || ||||| | ||||| || ||||| |||||||| ||| Sbjct 827830 TACCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 827771 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | || ||||| ||||| ||||| |||| | ||| |||||||| |||| Sbjct 827770 AGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 827711 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCG 118688 | ||||| || || ||| || || |||||| | ||| | || || | ||| ||| Sbjct 827710 GAATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCT-TCG 827652 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || |||| || | ||||| || || | || || ||||||||||||||| || Sbjct 827651 ACTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCATGCCT 827598 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || | || ||||| | ||||| || ||||| |||||||| ||| Sbjct 828056 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827997 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | || ||||| ||||| ||||| |||| | ||| |||||||| ||||| Sbjct 827996 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 827937 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 ||||| || |||||| |||||| || || | ||| | || || | ||| || || Sbjct 827936 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCT-TCTAC 827878 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || ||||||||||| || || |||||||| Sbjct 827877 TTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819952279392