Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq248 113 5e-20 seq726 107 2e-18 seq254 107 2e-18 seq135 107 2e-18 seq842 105 8e-18 seq255 91.5 2e-13 >seq248 Length=3919243 Score = 113 bits (124), Expect = 5e-20 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 60057 AAAAATTTTC--TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 3704343 AAAAATTTTCCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 3704284 Query 60115 ACTCACCACTATACTACCGAGG-ATTGAATATA 60146 ||| |||||||||||||||||| |||| |||| Sbjct 3704283 ACTTACCACTATACTACCGAGGAATTGGTTATA 3704251 >seq726 Length=257960 Score = 107 bits (118), Expect = 2e-18 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 231606 AAAAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 231663 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||||||| |||| Sbjct 231664 TGACCACTATACTACCGAAGATT 231686 >seq254 Length=4355184 Score = 107 bits (118), Expect = 2e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 2844537 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 2844478 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 2844477 CTTACCACTATACTACCGAGGATT 2844454 Score = 107 bits (118), Expect = 2e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 2845964 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 2845905 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||||||||||||||||||||| Sbjct 2845904 CTTACCACTATACTACCGAGGATT 2845881 >seq135 Length=928714 Score = 107 bits (118), Expect = 2e-18 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 645312 AAAAAATTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 645253 Query 60117 TCACCACTATACTACCGAGGA-TTGAATATATAA 60149 | |||||||||||||||| || || |||| ||| Sbjct 645252 TGACCACTATACTACCGAAGACTTTGATATTTAA 645219 >seq842 Length=91063 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 82625 AAAAAATTTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 82566 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 82565 TGACCACTATACTACCGAAGA 82545 >seq255 Length=939575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||||||| | || || || |||||||||||||| | || || | | || Sbjct 827586 CAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATC 827527 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| ||||| || || | |||||||||||| | || | || || ||||| Sbjct 827526 TTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTC 827467 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || |||| | | | || ||| | ||| || |||| ||||| || Sbjct 827466 CTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATTGT 827407 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || ||||| |||||||| ||||| Sbjct 827406 TTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803476105280