Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq188 120 5e-22 seq255 111 2e-19 >seq188 Length=1630868 Score = 120 bits (132), Expect = 5e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| || | ||||||||| | |||||||||||| |||||||| || | Sbjct 123876 TTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAG 123817 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||| || ||| || | |||||||||||||| ||||| || |||||||| || | Sbjct 123816 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123757 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 123756 GGATTCCTTCCTTATCTTG 123738 Score = 116 bits (128), Expect = 6e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| || | ||||||||| | |||||||||||| ||||| || || | Sbjct 124332 TTCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAG 124273 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | |||| || ||| || | |||||||||||||| ||||| || |||||||| || | Sbjct 124272 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 124213 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 124212 GGATTCCTTCCTTATCTTG 124194 Score = 104 bits (114), Expect = 3e-17 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||||||| | || || || | ||| |||||||| ||||| || |||| Sbjct 124560 TTCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTG 124501 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| || | ||| ||||||||||||||||| || ||||| || || | Sbjct 124500 AGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTG 124441 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | ||||| ||||| ||||| || || || || | Sbjct 124440 GGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAA 124381 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| |||||||| ||||| ||||||| || || |||||| Sbjct 124380 CTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | | ||||| ||| | || ||||| || || || ||||| | Sbjct 122964 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 122905 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | ||| ||||||||||| ||||| || |||||||| || | Sbjct 122904 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 122845 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 122844 GGATTCCTTCCTTATCTTG 122826 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | | ||||| ||| | || ||||| || || || ||||| | Sbjct 123192 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123133 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | ||| ||||||||||| ||||| || |||||||| || | Sbjct 123132 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123073 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 123072 GGATTCCTTCCTTATCTTG 123054 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | | ||||| ||| | || ||||| || || || ||||| | Sbjct 123420 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123361 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | ||| ||||||||||| ||||| || |||||||| || | Sbjct 123360 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123301 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 123300 GGATTCCTTCCTTATCTTG 123282 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | | ||||| ||| | || ||||| || || || ||||| | Sbjct 123648 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 123589 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | ||| ||||||||||| ||||| || |||||||| || | Sbjct 123588 AAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123529 Query 146169 GAATTCCTTCTTTATCTTG 146187 | |||||||| |||||||| Sbjct 123528 GGATTCCTTCCTTATCTTG 123510 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | | ||||| ||| | || ||||| || || || ||||| | Sbjct 124104 TTCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 124045 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || || || | ||| ||||||||||| ||||| || ||||| || || | Sbjct 124044 AAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTG 123985 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 123984 GGATTCCTTCTTTGTCTTG 123966 >seq255 Length=939575 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | || || || | ||||||||| || || || || || || Sbjct 827828 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827769 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| || || | |||||| |||||||| ||||| | ||||||||| |||||| Sbjct 827768 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 827709 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||||||| ||| ||| Sbjct 827708 ATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACT 827649 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||| ||||| |||||||| || |||| || || ||||| Sbjct 827648 TCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743508034897920