Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq255 95.1 8e-15 seq771 89.7 3e-13 >seq255 Length=939575 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || |||| |||| || | || ||||||||| || ||||| ||||| Sbjct 827600 CCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAA 827541 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| | | || |||| ||||||||| || || || | ||||||||||| || Sbjct 827540 AGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGA 827481 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | || | || | ||||| | ||| || Sbjct 827480 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACC 827421 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || || || ||||||||||||||||| Sbjct 827420 TCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || || || || || ||| | |||| |||| ||| ||||| ||||| Sbjct 828415 TTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAA 828356 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 ||| || || || || || ||| | || || ||||| || ||| ||||| | || Sbjct 828355 AATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTCCTGAAT-TTTAGCTTTGACAT 828297 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | |||| ||| | | ||| || |||| ||||| ||||| || |||||||| |||| Sbjct 828296 TTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCA 828237 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 828236 CGAAGATCTGCAT 828224 >seq771 Length=410761 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| ||||| |||||||| | ||| | || |||| ||||||||| ||||| | Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 34260 TGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 | || ||||| || || || || || || |||||||| ||||| ||||| || Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATAC-CT-TCCTTGTCTTGGATCTTGGCCTTTACATT 280158 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||||| | || || || | ||||| || ||||| || || || ||||| Sbjct 280159 TTCAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCAC 280218 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 280219 GAAGATCTGCAT 280230 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| || || |||||||| | ||| | || |||| ||||||||| ||||| || Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 34262 AGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 || ||||| || || || || || || ||||| || ||||| ||| | || Sbjct 282950 AGACGCTGTTGATCCGGAGGGATAC-CT-TCCTTATCTTGGATCTTGGCCTTCACATTTT 283007 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 |||| | ||||| | || || || | |||||||| ||||| || || || ||||||| Sbjct 283008 CTATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAA 283067 Query 34380 AGATCTGCAT 34389 |||||||||| Sbjct 283068 AGATCTGCAT 283077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064219618560