Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq211 168 6e-37 seq255 131 1e-25 seq188 102 7e-17 seq1554 93.3 4e-14 seq771 91.5 1e-13 >seq211 Length=255845 Score = 168 bits (186), Expect = 6e-37 Identities = 295/427 (69%), Gaps = 2/427 (0%) Strand=Plus/Plus Query 57676 ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATT 57735 ||||||| || || ||||||||||| || ||||| ||||||||||| || |||||| Sbjct 251799 ATTTTATATCCCATGTATTGGCGTTTTTTGCAGCATCAGATGGTATTGTCAATGAGAATC 251858 Query 57736 TGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | || ||| | || |||||||| ||||| ||||| || | ||||| || || |||| Sbjct 251859 TAGTAGAACGGTTCAGTCAAGAAGTCCAAGTAACGGAAGCACGGTGCTTCTATGGTTTTC 251918 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 || | || |||||||| || || |||||||||||||| || || || | || | | | | Sbjct 251919 AAATAGCAATTGAAAATGTACACTCAGAAATGTATTCCCTCCTTATAAACACATTCATCA 251978 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGA-AACAATGCCCGCGATCGCC 57914 | ||| |||| | || ||||| || ||||| || | || ||| | || Sbjct 251979 GTAATGCCGAAGAGAGGGATTTTCTCTTCAATGCCATCGAGAATCTTCCCTGCG-TTGCT 252037 Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 || || || | ||| | | || ||||| | ||| || || || || || | Sbjct 252038 AAAAAAGCCAATTGGGCCTTAAATTGGATTTCGCATGACACAGCAACTTTTGCAGAACGT 252097 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 | || |||||||| || || ||||| || ||||| || || || || || || ||| Sbjct 252098 GTGATTGCGTTCGCAGCGGTAGAAGGAATCTTCTTCAGTGGTAGTTTCGCTGCTATCTTT 252157 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| |||||||||| || | ||||| || || || || |||||||| || || || | Sbjct 252158 TGGCTGAAGAAACGTGGTATCATGCCTGGACTTACATTCAGCAACGAATTAATTTCCAGA 252217 Query 58095 GACGAGG 58101 || |||| Sbjct 252218 GATGAGG 252224 >seq255 Length=939575 Score = 131 bits (144), Expect = 1e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 ||||| |||||| || || || ||||| || ||||| ||||| |||||| |||| ||||| Sbjct 827367 ATCAATCATGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGA 827426 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | | ||||| | | |||| ||||| | || |||||| |||||| | || || Sbjct 827427 AGCTTCCGATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACC 827486 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 ||||||||||| | || || |||||||| ||| ||||||| | || | ||| Sbjct 827487 TGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGA 827546 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || ||||| |||||||| || |||||| |||| | ||||| Sbjct 827547 TTACAATATTCAGAAAGAATCAACGCTTCATTTGGTTTTGAGACT 827591 >seq188 Length=1630868 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| ||||| || || |||||| | || |||||| | || Sbjct 122964 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123023 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| || |||||||| | || || || ||| Sbjct 123024 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123083 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| || || | ||||| | | | ||| | ||||| || Sbjct 123084 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGA-TGGACGTACTCTTTCTGATTACAA 123142 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || |||||||||||||| Sbjct 123143 CATTCAGAAGGAATCCACCCTTCATCTGGTACT 123175 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| ||||| || || |||||| | || |||||| | || Sbjct 123192 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123251 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| || |||||||| | || || || ||| Sbjct 123252 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123311 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| || || | ||||| | | | ||| | ||||| || Sbjct 123312 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGA-TGGACGTACTCTTTCTGATTACAA 123370 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || |||||||||||||| Sbjct 123371 CATTCAGAAGGAATCCACCCTTCATCTGGTACT 123403 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| ||||| || || |||||| | || |||||| | || Sbjct 123420 ATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTCA 123479 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| || |||||||| | || || || ||| Sbjct 123480 GACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 123539 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| || || | ||||| | | | ||| | ||||| || Sbjct 123540 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGA-TGGACGTACTCTTTCTGATTACAA 123598 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || |||||||||||||| Sbjct 123599 CATTCAGAAGGAATCCACCCTTCATCTGGTACT 123631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| |||||||| |||||| |||| || || || |||||| | || ||||| | Sbjct 122732 AATCATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGGC 122791 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| || ||| | ||| || |||||||| | || || || Sbjct 122792 ATCTGATACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGA 122851 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| | | || || ||||| || || | ||||| | | | ||| | |||| Sbjct 122852 TCAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGA-TGGACGTACTCTTTCTGATT 122910 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | |||||||| || ||||| || |||||||||||||| Sbjct 122911 ACAACATTCAGAAGGAATCCACCCTTCATCTGGTACT 122947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || | || ||||||||||||||| | || ||||| | ||| Sbjct 123876 ATGCAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATCC 123935 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| ||||| ||||| | || || |||||| Sbjct 123936 GACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAG 123995 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || | |||||| ||| | ||||| ||| Sbjct 123996 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAAC 124055 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || |||||||||||||| Sbjct 124056 ATTCAGAAGGAATCCACCCTTCATCTGGTACT 124087 >seq1554 Length=169980 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||| | ||||| || || || || | || ||||| || || || || |||| || Sbjct 3963 ACAAACATATTGACAGCAATGGATGCCAAGTTACATACTGCAACTTCCTCA--GGACTTG 3906 Query 23066 --TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 |||| || ||| || ||||| ||||| |||| ||| || || || |||| ||| | Sbjct 3905 AATACTGTATAATCTCTGTACAGAGATTACTACTCTTAATTGTTCCTAAATGTTGCTGAT 3846 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 || ||| ||||| || ||| ||||| ||||| ||||||||||| || || || || | Sbjct 3845 TGGATTTGCGATTACAATGATCTTTGTACAGCATATACGGCGTGCCTGTTTCTACTTGAG 3786 Query 23184 AC 23185 || Sbjct 3785 AC 3784 >seq771 Length=410761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || ||||| | ||| Sbjct 280230 ATGCAGATCTTCGTGAAGACCCTAACGGGCAAGACTATCACCCTTGAGGTTGAGGCTTCC 280171 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || ||||||||||| | || || || || Sbjct 280170 GATACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCGGATCAA 280111 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||||||||| ||| ||||||| Sbjct 280110 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGA 280076 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| | || ||||| | ||| Sbjct 283077 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACCATCACCCTTGAGGTTGAGGCTTCC 283018 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || || |||||||| | || || || || Sbjct 283017 GATACTATAGAAAATGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCGGATCAA 282958 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||||||||| ||| ||||||| Sbjct 282957 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGA 282923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755389569920