Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_003216.1 Length=40834 Score E Sequences producing significant alignments: (Bits) Value seq1680 102 2e-17 >seq1680 Length=1916 Score = 102 bits (112), Expect = 2e-17 Identities = 194/280 (69%), Gaps = 18/280 (6%) Strand=Plus/Minus Query 33081 AGCACAGTTTCAGCTTGGTTATAAAGGATACATCCAGTTAGCGCTACGCACAGGACAATA 33140 |||||||||||| | || |||||||| || || || ||||| | | | | |||||| Sbjct 1640 AGCACAGTTTCAAATGGGATATAAAGGTTATATTCAATTAGCACAAAGAAGTCAACAATA 1581 Query 33141 TAAAAGCATTAATGTTATCGAAGTGCGAGATGGCGAGTT-ACTAAAATGGAATCGACTT- 33198 ||||| ||||||||||| ||||| |||| || || || | ||||| || | |||| Sbjct 1580 TAAAAAAATTAATGTTATTGAAGTTAGAGAAGGAGAATTAAAAAAAATTGATT--ACTTA 1523 Query 33199 ACTGAAGAAATCGAA-TTAGATTTAGACAACAATACAAGTGAA-----AAAGTCA----- 33247 | || ||||| || ||| ||||| || ||| | | |||| ||| ||| Sbjct 1522 AAAGACGAAATAAAATTTAAATTTATTGAA-AATCCTATTGAAAGATTAAAATCAAAAAT 1464 Query 33248 --TTGGTTACTGTGGTTATTTTCAGTTGATAAATGGTTTTGAAAAAACGGTCTATTGGAC 33305 | ||||| |||| ||||||| | || | ||||||||||||||||| | ||||| || Sbjct 1463 AGTAGGTTATTGTGCTTATTTTAAATTAAAAAATGGTTTTGAAAAAAATTTATATTGAAC 1404 Query 33306 TCGCAAAGAAATTGAAGCACATAAAAAGAAATTTAGTAAA 33345 || || | || || |||| || |||| |||| || Sbjct 1403 AAGCGAACAGATAATAGAACATTTTAATAAATATAGTGAA 1364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130544136709952