Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq648 125 7e-24 seq211 120 3e-22 seq1554 118 1e-21 >seq648 Length=307961 Score = 125 bits (138), Expect = 7e-24 Identities = 192/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 37073 TATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGAT 37132 |||| ||||| ||| |||||||| |||| | | | || |||||||| || | |||| Sbjct 2289 TATTTTTTATCTCAACATTCCACAAATTTTTCTCTGTCAGATCTCTCAAGAGATAGGGAT 2348 Query 37133 TTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTT 37192 ||| || ||||| ||| ||||| || ||| | | ||||| | ||||| ||||| |||| Sbjct 2349 TTATAAATTGAAATTCTTCAGATGATGCTCGTGTGGTATACACGTTGCTCGTATAAGGTT 2408 Query 37193 CAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTA 37252 |||| || || | || | || | ||||| ||||| | |||||||||| || |||| Sbjct 2409 CAATAGATTCGCTGTTTCCCAAAACTTGAGCAGTAGACGTCGTAGGCATTGATGTGATTA 2468 Query 37253 GAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATA 37312 | | ||| | | |||| | | |||| | ||||| || |||||||||||| Sbjct 2469 GTAAAGAATTGCGAACCCCATATTTCGCAATTTTTTTTTTAAGAGTTGTCCAATCCCATA 2528 Query 37313 AATCTGTTGGGTTCTTTAACCACATATCATATTG 37346 | ||||| || ||| |||||| ||||| || Sbjct 2529 ATTCTGTCGGCTTCACATTCCACATGTCATACTG 2562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 37410 TTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATAT 37469 ||||||||| | || | || ||||| || | |||||||||||||| ||||| | | | Sbjct 2719 TTCGCAACTTGCCTCCAAAGCAGCATAGTACAAAGTTTCGAAAATTTGAATATTAAGTTT 2778 Query 37470 TTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTG 37529 || || || ||||| ||||||| ||| | || ||| ||||| |||| |||||||| || Sbjct 2779 TTGAGCGTCCTCGCTTTCGAATGGATAACGCATTAAAATAAATGCATCTGCCAAACCTTG 2838 Query 37530 AACACCGATACCT 37542 | || |||||| Sbjct 2839 TATTCCAATACCT 2851 >seq211 Length=255845 Score = 120 bits (132), Expect = 3e-22 Identities = 287/430 (67%), Gaps = 13/430 (3%) Strand=Plus/Minus Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 ||||| | ||| ||||| | || ||||| || | |||||| |||||||| || |||| Sbjct 252195 AATGTAAGTCCAGGCATGATACCACGTTTCTTCAGCCAAAAGATAGCAGCGAAACTACCA 252136 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA---TACCTTG 11797 ||||| ||||| || || ||||| || || | || | |||| || | | | || Sbjct 252135 CTGAAGAAGATTCCTTCTACCGCTGCGAACGCAATCACACGTTCTGCAAAAGTTGCTGTG 252076 Query 11798 T--TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTT 11855 | ||| || ||||| ||| |||||||| ||||| || ||||| | | | Sbjct 252075 TCATGC--GAAATCCAATTTAAGGCCCAATTGGCTTTTTTAGCAACGCAGGGAAGATTCT 252018 Query 11856 CTATAGCGTTAAATA---AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTA 11912 | || || || || | ||| | | | ||| |||| || | |||| | ||| | Sbjct 252017 CGATGGCATTGAAGAGAAAATCCCTCTCTTCGGCATTA---CTGATGAATGTGTTTATAA 251961 Query 11913 ATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATC 11972 | |||||||||||| || | |||||| || ||||||||||| |||||||| || | Sbjct 251960 GGAGGGAATACATTTCTGAGTGTACATTTTCAATTGCTATTTGAAAACCATAGAAGCACC 251901 Query 11973 GTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATAC 12032 |||| || | || || || | || | ||| ||| ||||||||| ||||||| Sbjct 251900 GTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTTCTACTAGATTCTCATTGACAATAC 251841 Query 12033 CATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTA 12092 |||| | ||||||||| || | || ||| |||||| | |||||| | |||| Sbjct 251840 CATCTGATGCTGCAAAAAACGCCAATACATGGGATATAAAATGACGTTCGTCATCTGTTA 251781 Query 12093 ATTTATCCCA 12102 | || |||| Sbjct 251780 ACTTTACCCA 251771 >seq1554 Length=169980 Score = 118 bits (130), Expect = 1e-21 Identities = 200/285 (70%), Gaps = 11/285 (4%) Strand=Plus/Minus Query 37584 TGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTAT 37643 |||||||||||| |||| || | ||| || ||||| | | |||||| |||| Sbjct 4063 TGGATAATAATTCCTATCAATGACTTTGTTGAGATTACGAGTCACTATTTTTGTAACAGC 4004 Query 37644 TCTCAACTTGTCGAA--CATAAATACGTTAT----TATTAACAAATTTACTCAACGAAAT 37697 ||| || || || |||| | || | |||| ||||| || | | | ||| Sbjct 4003 CTTCAGTTTTTCAAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAAT 3944 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACA 37757 ||| | | |||||||| |||||||| || | | | ||||||||||||||||| Sbjct 3943 GGATGCCAAGTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACA 3884 Query 37758 GAGATTACTCGATCTAATTGTTCCCAAAT--TGCTTTGATTGGATTTTTTATTACAAGAA 37815 ||||||||| |||||||||| |||| |||| |||||||||| ||||||| | Sbjct 3883 GAGATTACTACTCTTAATTGTTCCTAAATGTTGCT--GATTGGATTTGCGATTACAATGA 3826 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAG-CCTC 37859 ||||| || || ||||||||||| ||| ||||| ||||| |||| Sbjct 3825 TCTTTGTACAGCATATACGGCGTGCCTGTTTCTACTTGAGACCTC 3781 Score = 105 bits (116), Expect = 6e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 || || || || | |||||| | ||||| | | || || ||||||| |||||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 ||||| ||||| |||||||| || || | || || ||||| || || || || ||| Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 || || || ||||| | || ||||| | || || || || |||||||| || | ||| Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 | ||| | || |||||| | |||| | | ||| || | ||||||||||| | Sbjct 4549 AAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATAGA 4490 Query 37315 TCTGTTGG 37322 || ||||| Sbjct 4489 TCAGTTGG 4482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 37401 TTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTAT 37460 |||||| ||||| ||||||| || | ||| |||||||||| |||||||||||||| || Sbjct 4319 TTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTTTCGAAAATTTGAAT 4260 Query 37461 ATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGC 37520 ||| | ||| ||||| || || || || | ||| | || || | ||| |||| || Sbjct 4259 ATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAAAGAAATGCATCGGC 4200 Query 37521 CAAACCCTGAACACCGATACCT 37542 ||| ||||| | || |||||| Sbjct 4199 CAAGCCCTGTATTCCTATACCT 4178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513227437440