Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq211 163 4e-35 seq1554 156 6e-33 seq295 95.1 2e-14 seq648 89.7 7e-13 >seq211 Length=255845 Score = 163 bits (180), Expect = 4e-35 Identities = 292/426 (69%), Gaps = 3/426 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||||||||||| || || ||||| ||||| | ||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || | || || ||| ||||| ||||||||||| || || || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 36356 |||| | | ||| || || || ||||||| ||||| ||| ||||||| || Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 36416 | || || || || || | |||| || ||||| |||||| | | | || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 36417 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 || | | |||| | || | || ||||||||| || || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 36477 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 | |||||||| || ||||| || | || || || | || |||||| || || |||| Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 || ||| ||| ||||| || || || || ||||||||||||||||||||||| || Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 36597 TAAAAT 36602 |||||| Sbjct 251804 TAAAAT 251799 >seq1554 Length=169980 Score = 156 bits (172), Expect = 6e-33 Identities = 182/244 (75%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 || || ||||| |||||||| | |||||||| || | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || |||||||||||||||||||| || | || ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | || || ||||| ||||||||||| ||||| || || |||||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 65298 AAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAA 65355 ||| ||| | | ||| ||||| || ||||| ||||| || | | |||||| ||| | Sbjct 4549 AAAGAATTCCGCACACC--ATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATA 4492 Query 65356 GATC 65359 |||| Sbjct 4491 GATC 4488 Score = 138 bits (152), Expect = 1e-27 Identities = 194/270 (72%), Gaps = 12/270 (4%) Strand=Plus/Minus Query 65579 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 65638 |||||| |||||||| || | | |||| || ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 65639 AATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTT 65695 |||| || | ||| |||||||| | | || ||| |||| ||| |||||||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATT--TTTG-TAACAGCCTTCAGTTT 3995 Query 65696 GAGAAAATCAAATCGCT------CATCTATTACAAACATGTTCAATGCAACAGATGCCAG 65749 ||||||| || || || |||||||||| || | |||| ||||||| Sbjct 3994 TTCAAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAA 3935 Query 65750 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 65809 ||||| || || || || | || | | ||| ||||| ||||| || || |||||||| Sbjct 3934 GTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACT 3875 Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATT 65839 || ||| || |||||||||| ||| ||||| Sbjct 3874 ACTCTTAATTGTTCCTAAATGTTGCTGATT 3845 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || |||||||| || | ||| | |||| ||| | || || || ||||| ||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || ||||| | || ||||| || ||||| || |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 | || || || | ||||||||| || ||||| ||||| | | |||| | ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 | ||| ||| | |||| || |||||||||||||| || ||||| |||||| || || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 66675 TAAA 66678 |||| Sbjct 2803 TAAA 2800 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 |||||| || |||||||| |||| | | |||||||||| | || ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || ||||| | | ||||||||||| ||||||||||||||||| || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 | ||||| | || | |||||| |||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 >seq295 Length=3859974 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 66560 ||||| | |||||| || ||||||||| || || ||| | || ||| ||| | | Sbjct 1466980 TCAGACATTAGATTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATA 1467039 Query 66561 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 66620 || || | ||||| ||| ||||| ||||||||||||| ||| || ||||||| | Sbjct 1467040 GCAACTCTCATTATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGA 1467099 Query 66621 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 66680 || || ||||| | |||||| ||||| ||||| || |||||| ||| | || | Sbjct 1467100 TAATTTTCTTCCAGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCGCGTCCATATACT 1467159 Query 66681 ATAACCGAGTTGAGTTTATC 66700 || || || || ||| |||| Sbjct 1467160 ATTACTGAATTTAGTATATC 1467179 >seq648 Length=307961 Score = 89.7 bits (98), Expect = 7e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 66509 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 66568 || |||||| |||||||| || || || || || |||||| | || || | Sbjct 4094 TAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCAACTCT 4153 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||||||||| |||||||||||||| || | |||| |||||| || | || || ||| Sbjct 4154 CATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAGCTTTT 4213 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688 ||||| |||||||| ||||| || || || |||||| || || || | || || || Sbjct 4214 TTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATTACAGA 4273 Query 66689 GTTGAGT 66695 || ||| Sbjct 4274 ATTTAGT 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156543131840