Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq255 129 6e-25 seq1554 111 2e-19 seq188 95.1 1e-14 >seq255 Length=939575 Score = 129 bits (142), Expect = 6e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||||||||||| ||||| || ||||| ||||| || ||| Sbjct 828057 GCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 827998 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || ||||||||| |||||||||||| |||||| |||||||||||| ||||| Sbjct 827997 GAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 827938 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| |||| | || | | ||| | || || | | || | Sbjct 827937 AATGCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTA 827879 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 | || | || | || || || |||| ||||| ||||| || |||||| || Sbjct 827878 CTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCATACCT 827826 Score = 116 bits (128), Expect = 4e-21 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||||||||| ||||| || ||||| ||||| || ||| | ||| || |||||| Sbjct 827811 AACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTC 827752 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||||||| |||||| |||||||||||| ||||| ||||||||||| || Sbjct 827751 GAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTATC 827695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| || |||| ||| || ||||| ||||| || |||||| | || || || Sbjct 827586 CAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATC 827527 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| ||||| || |||||| |||||| || ||||| || || || |||||||||||||| Sbjct 827526 TTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTC 827467 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || || | | ||| | ||| |||| | || ||||| | ||| | || Sbjct 827466 CTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATTGT 827407 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || | || || || || || ||||| Sbjct 827406 TTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || ||||||| || || ||||| ||||| |||||||| | || || Sbjct 828441 AAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTT 828382 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || |||||||| || || | || |||||||| ||||| || || ||||||||| Sbjct 828381 CCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCT 828322 Query 139667 TTGTCGGTGATTTTTTGTTTT 139687 ||||| ||| |||| | ||| Sbjct 828321 TTGTC-CTGAATTTTAGCTTT 828302 >seq1554 Length=169980 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACT-GTGAAACGG 153130 || |||||||||||||| || ||||| || || |||| ||| |||||| ||| || || Sbjct 4672 TTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAA-GG 4614 Query 153131 TTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 153190 |||| || ||||| || | |||||||| |||| |||||||||||| ||||| Sbjct 4613 CTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAA 4554 Query 153191 AAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCA 153250 || || ||||| || | || |||||| || || |||| || ||| ||||| Sbjct 4553 TAGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCA 4494 Query 153251 TAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATC 153293 || ||| ||| | ||||||||| ||||| ||||||||| Sbjct 4493 TAGATCAGTTGGTGTGACATTCCACATGTCGTACTGCAATATC 4451 >seq188 Length=1630868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || || |||||||| ||||| | |||| |||||| || || Sbjct 124078 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCAAGTTGC 124019 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||||| | ||||| || || || || ||||||||||| ||| |||| Sbjct 124018 TTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTC-TTGAATTTT 123960 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | ||| | ||||||| | ||| || |||| ||| | ||| ||||| || Sbjct 123959 AGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTGCCAGT 123900 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 |||||||| || || || ||||| Sbjct 123899 TAACGTTTTAACAAAGATCTGCAT 123876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051747219200