Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1554 165 1e-35 seq211 152 7e-32 seq295 109 8e-19 seq648 89.7 7e-13 >seq1554 Length=169980 Score = 165 bits (182), Expect = 1e-35 Identities = 195/262 (74%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 || || ||||| |||||||| | |||||||| || | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || |||||||||||||||||||| || | || ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | ||||| ||||| ||||||||||| ||||| || ||||| ||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 79177 AAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAA 79234 ||| ||| | | ||| ||| | || ||||| ||||| || | | |||||||||| | Sbjct 4549 AAAGAATTCCGCACACC--ATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATA 4492 Query 79235 GATCAGACGGGACAACATTCCA 79256 |||||| || |||||||| Sbjct 4491 GATCAGTTGGTGTGACATTCCA 4470 Score = 141 bits (156), Expect = 1e-28 Identities = 232/331 (70%), Gaps = 14/331 (4%) Strand=Plus/Minus Query 79458 AATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 79517 |||||| |||||||| || | | |||| ||| ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 79518 AATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTT 79574 |||| || | ||| |||||||| | | |||||| |||| ||| |||| ||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATT--TTTG-TAACAGCCTTCAGTTT 3995 Query 79575 GAGAAAATCAAATCGTC-------CATCTATTACAAACATGTTCAACGCGACAGATGCCA 79627 ||||||| || ||| || |||||||||| || | || | ||||||| Sbjct 3994 TTCAAAATCATAT-GTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCA 3936 Query 79628 GATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTAC 79687 ||||| || || || || | || | | ||| ||||| || || || ||||| |||| Sbjct 3935 AGTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTAC 3876 Query 79688 TACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 79747 ||| |||||| |||||||||| ||| ||||| || ||||| ||| || || | Sbjct 3875 TACTCTTAATTGTTCCTAAATGTTGCTGATTGGATTTGCGATTACAATGATCTTTGTACA 3816 Query 79748 GAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 | || |||| || || ||||| | ||||| Sbjct 3815 GCATATACGGCGTGCCTGTTTCTACTTGAGA 3785 Score = 116 bits (128), Expect = 5e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || |||||||| || | ||| | |||| ||| | || || || ||||| ||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || ||||||| || ||||| || ||||| || |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | ||||||||| || ||||| ||||| | | |||| || ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 | ||| || | |||| || |||||||||||||| || ||||| |||||| || || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 80554 TAAA 80557 |||| Sbjct 2803 TAAA 2800 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 |||||| || |||||||| ||||| | | |||||||||| || ||| ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||| ||||| | | ||||||||||| ||||||||||||||||| || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 || ||||| | || | ||||| |||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||| ||||||||||| | ||| |||| ||||||| |||||| ||||||| |||||| | Sbjct 3404 TATTTTTTTTAAGATCCAAGAATTCCATTATATCAGCATGCCATGGTTCCACGTATATAG 3345 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | |||| |||| |||||||| ||||| || | |||| || ||||| ||| Sbjct 3344 CAAATGCTCCAGGTCTCTTGTTTCCACCCTGGTCAACATATCGTGCCACATTATTGAAAA 3285 Query 80132 CTCTCAACATTGGAA 80146 | | | ||||||| Sbjct 3284 GTTTGAGTATTGGAA 3270 >seq211 Length=255845 Score = 152 bits (168), Expect = 7e-32 Identities = 295/435 (68%), Gaps = 3/435 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||||| || || ||||| ||||| | ||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || | || || ||| ||||||||||||||||| || || || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 50158 ||| | | ||| || || | || ||||||| ||||| ||| ||||||| || Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 50218 | || || || || || | | || |||||||| |||||| | | | || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 50219 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 50278 || | | | || | || | || ||||||||| || || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 50279 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTT 50338 | || ||||| || ||||| || | || || || | || |||||| || || |||| Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 50339 CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 50398 | ||| ||| ||||| || || || || ||||||||||||||||||||||| || Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 50399 TAAAATGTTTTTCGT 50413 ||||||| ||||| Sbjct 251804 TAAAATGACGTTCGT 251790 >seq295 Length=3859974 Score = 109 bits (120), Expect = 8e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 80380 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACC 80439 ||||||| |||||| || ||||||||| || || ||| | || ||| ||| | | Sbjct 1466980 TCAGACATTAGATTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATA 1467039 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 || || | ||||| ||| ||||| ||||||||||||| ||| ||| ||||||| | Sbjct 1467040 GCAACTCTCATTATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGA 1467099 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 80559 ||| || ||||| | |||||| ||||| ||||| || |||||| ||| | || | Sbjct 1467100 TAATTTTCTTCCAGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCGCGTCCATATACT 1467159 Query 80560 ATAACCGAGTTGAGTTTATC 80579 || || || || ||| |||| Sbjct 1467160 ATTACTGAATTTAGTATATC 1467179 >seq648 Length=307961 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCG 80442 |||| || |||||| |||||||| || ||| || || || |||||| | || Sbjct 4089 GACATTAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCA 4148 Query 80443 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAA 80502 || | ||||||||| |||||||||||||| || | |||| ||||| || | || | Sbjct 4149 ACTCTCATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAG 4208 Query 80503 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 80562 |||||||| |||||||| ||||| || || || |||||| || || || | || Sbjct 4209 CTTTTTTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATT 4268 Query 80563 ACCGAGTTGAGT 80574 || || || ||| Sbjct 4269 ACAGAATTTAGT 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251058760640