Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq211 176 6e-39 seq1554 161 1e-34 seq295 113 6e-20 seq648 98.7 1e-15 >seq211 Length=255845 Score = 176 bits (194), Expect = 6e-39 Identities = 308/448 (69%), Gaps = 3/448 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||||||||||| || || ||||| ||||| | ||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| |||| || || ||| ||||||||||||||||| || || || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 42263 |||| | | ||| || || || ||||||| ||||| ||| ||||||| || Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 42323 | || || || || || | | || |||||||| |||||| | | | || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 42324 TATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGG 42383 || | | |||| | || | || |||||||||||| || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 42384 CCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTT 42443 | || ||||| || ||||| || | || || || || || |||||| || || |||| Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 42444 CAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 42503 | ||| ||| || || || || || || ||||||||||||||||||||||| || Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 42504 TAAAATATTTTTCGTCCGGTGTTAATTT 42531 |||||| |||||| |||||| || Sbjct 251804 TAAAATGACGTTCGTCATCTGTTAACTT 251777 >seq1554 Length=169980 Score = 161 bits (178), Expect = 1e-34 Identities = 185/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 ||||| ||||| |||||||| | |||||||| || | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || |||||||||||||||||||| || | | ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||| || ||||| ||||||||||| ||||| || || |||||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 71260 AGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGA 71319 | | ||| | | ||||||| | ||||| ||||| || | | |||||| ||| ||| Sbjct 4549 AAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATAGA 4490 Query 71320 TCCGATGGT 71328 || | |||| Sbjct 4489 TCAGTTGGT 4481 Score = 150 bits (166), Expect = 2e-31 Identities = 233/330 (71%), Gaps = 12/330 (4%) Strand=Plus/Minus Query 71541 AATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 71600 |||||| ||||||||||| | | |||| ||| ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 71601 AATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTT 71657 |||| || | ||| |||||||| | | |||||| |||| ||| |||| ||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATT--TTTG-TAACAGCCTTCAGTTT 3995 Query 71658 GAGAAAATCAAATCTC------CCATCTATTACAAACACGTTCAAGGCAACAGATGCCAG 71711 ||||||| || || || ||||||||| || | |||| ||||||| Sbjct 3994 TTCAAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAA 3935 Query 71712 ATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACT 71771 ||||| || || || || | || | | ||| |||||||| || || || |||||||| Sbjct 3934 GTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACT 3875 Query 71772 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 71831 || ||| || |||||||||| ||| ||||| || ||||| ||| || || || Sbjct 3874 ACTCTTAATTGTTCCTAAATGTTGCTGATTGGATTTGCGATTACAATGATCTTTGTACAG 3815 Query 71832 AATAAACGGAGTACCAGTTTCAATCTGAGA 71861 ||| |||| || || ||||| | ||||| Sbjct 3814 CATATACGGCGTGCCTGTTTCTACTTGAGA 3785 Score = 125 bits (138), Expect = 1e-23 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||||||| || | ||| | |||| ||| | || || || ||||| ||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || ||||||| || ||||| || ||||| || |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | |||||||||||| ||||| ||||| | | |||| || ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 | ||| ||| | |||| || |||||||||||||| || ||||| |||||| || || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 72637 TAAATAATAACCGAATT 72653 |||| || | ||||| Sbjct 2803 TAAACTATTGCAGAATT 2787 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 |||| ||||||| || || ||||||||||| ||||| |||||||||||||| || ||| Sbjct 4333 TATGTGCCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTT 4274 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 |||||||| | |||| || | ||| |||||| || ||||| |||||| | | | Sbjct 4273 TCGAAAATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAA 4214 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 | ||| || || || || || || | || ||||| Sbjct 4213 AGAAATGCATCGGCCAAGCCCTGTATTCCTATACC 4179 >seq295 Length=3859974 Score = 113 bits (124), Expect = 6e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 ||||||| |||||| || ||||||||| || || ||| | || ||| ||| | | Sbjct 1466980 TCAGACATTAGATTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATA 1467039 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 || || | ||||| ||||||||| ||||||||||||| ||| ||| ||||||| | Sbjct 1467040 GCAACTCTCATTATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGA 1467099 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || ||||| | |||||| ||||| ||||| || |||||| ||| | || | Sbjct 1467100 TAATTTTCTTCCAGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCGCGTCCATATACT 1467159 Query 72643 ATAACCGAATTGAGTTTATC 72662 || || ||||| ||| |||| Sbjct 1467160 ATTACTGAATTTAGTATATC 1467179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/252 (68%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 71079 ATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 71138 ||| || || ||| || |||| | |||||||| || | | |||| | ||||||||||| Sbjct 1465126 ATTCTTCATGTCTGCACTCCAGAGATTTCTCTCAGTCAGATCTCTCAACAGATGAGGATT 1465185 Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 | | |||||||||| ||| ||| | | | || || || || |||| ||||| Sbjct 1465186 TATGAATTGAAATTCTTTAGAGAATGTTTTCCTTACATACATGTTGCTTATATAAGGTTC 1465245 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | ||| || ||||||| ||||||| |||||||| | || || | | ||| | | Sbjct 1465246 AATTGATTCGCTATTTCCTAAAATTTCAGCAGTTGGCGATGTAGGAGTTGATGCAATGAG 1465305 Query 71259 TAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAA 71316 || | ||| | || ||| || |||| ||||| || || |||| | |||| | ||| Sbjct 1465306 TAAAGAATTACGAATCCCA--TGCTCGGAAATTTTCTCCTTGAGAGCTGCCCAGTCCCAT 1465363 Query 71317 AGATCCGATGGT 71328 | | |||||| Sbjct 1465364 AAGTTAGATGGT 1465375 >seq648 Length=307961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 |||| || |||||| |||||||| || ||| || || || || ||| | || Sbjct 4089 GACATTAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCA 4148 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 || | |||||||||||||||||||||||| || | |||| ||||| || | || || Sbjct 4149 ACTCTCATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAG 4208 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 72645 |||||||| |||||||| ||||| || || || |||||| || || || | || Sbjct 4209 CTTTTTTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATT 4268 Query 72646 ACCGAATTGAGT 72657 || ||||| ||| Sbjct 4269 ACAGAATTTAGT 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122622861760