Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq255 161 1e-34 seq1554 123 3e-23 seq188 102 8e-17 >seq255 Length=939575 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | || | |||||| |||| |||||||| ||||| |||||||| ||| Sbjct 828057 GCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 827998 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || |||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct 827997 GAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 827938 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| |||||| || | | ||| | ||| || | | |||||| Sbjct 827937 AATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTAC 827878 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | || || || |||| ||||| ||||| || |||||| || Sbjct 827877 TTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCATACCT 827826 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | |||||| |||| |||||||| ||||| |||||||| ||| Sbjct 827828 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827769 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||||||||||||||||||| |||||| |||||||||||| ||||| Sbjct 827768 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 827709 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||||||||| || || || ||| | | ||| | || || | | ||| ||| Sbjct 827708 ATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACT 827649 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || || || || || || || ||||| Sbjct 827648 TCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || || |||| || |||||||| || || || ||||| | || || Sbjct 828441 AAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTT 828382 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || || ||||| || || | || |||||||| ||||| || || ||||||||| Sbjct 828381 CCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCT 828322 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| |||||| ||| | | ||| | ||| |||| | ||| ||||| | ||| Sbjct 828321 TTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTG 828262 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || || || | || || ||||| || |||||| Sbjct 828261 ATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCATA 828223 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | | |||||| ||||||| || |||||||| || || ||||||||| Sbjct 827601 GCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGA 827542 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| || || || |||||| |||||| || ||||| || || || Sbjct 827541 AAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGG 827482 Query 143077 TATGCCTTCTTTGTC 143091 |||||||||||||| Sbjct 827481 AATGCCTTCTTTGTC 827467 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 || ||||||||||||| || ||||| ||||| || ||||| || | |||| || | Sbjct 828210 CGTAAAACTAAATGAAGCGTTGATTCCTTTTGGATATTGTAGTCTGATAGCGTGCGTCCA 828151 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 ||||| |||||||||||||| |||||| |||||||||||| ||||| Sbjct 828150 -TCTTCAAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGG 828104 >seq1554 Length=169980 Score = 123 bits (136), Expect = 3e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACT-GTGAAACGG 156552 || |||||||||||||| || |||||||| || |||| ||| |||||| ||| || || Sbjct 4672 TTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAA-GG 4614 Query 156553 TTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 156612 |||| ||| ||||| ||| | |||||||| |||| |||||||||||| ||||| Sbjct 4613 CTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAA 4554 Query 156613 AAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCA 156672 || || ||||| || | || | |||| || ||| ||||| | || ||| ||||| Sbjct 4553 TAGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCA 4494 Query 156673 TAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATAT 156714 || ||| ||| |||||||| ||||| |||||||| Sbjct 4493 TAGATCAGTTGGTGTGACATTCCACATGTCGTACTGCAATAT 4452 >seq188 Length=1630868 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 123190 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123131 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || |||||| |||||| | |||||||| || || Sbjct 123130 AGAGTACGTCCA-TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123072 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| ||||| | ||| | |||||| | || ||| || Sbjct 123071 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123012 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| || || | || || |||||||| ||||| Sbjct 123011 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 123418 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123359 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || |||||| |||||| | |||||||| || || Sbjct 123358 AGAGTACGTCCA-TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123300 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| ||||| | ||| | |||||| | || ||| || Sbjct 123299 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123240 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| || || | || || |||||||| ||||| Sbjct 123239 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 123646 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123587 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || |||||| |||||| | |||||||| || || Sbjct 123586 AGAGTACGTCCA-TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123528 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| ||||| | ||| | |||||| | || ||| || Sbjct 123527 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123468 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| || || | || || |||||||| ||||| Sbjct 123467 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123420 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| ||||||||||| || || ||||| || | ||| | || || Sbjct 124312 ACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGCCATCCTCA 124253 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| |||||| |||||| | |||||||| || || || ||||| || || | Sbjct 124252 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 124193 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||||| | ||| | |||||| | || ||| ||||||| || | ||||| Sbjct 124192 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 124133 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || || |||||||| ||||| Sbjct 124132 CCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| ||||||||||| || || || || || | ||| | || || Sbjct 123856 ACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCCTCA 123797 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| |||||| |||||| | |||||||| || || || ||||| || || | Sbjct 123796 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123737 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||||| | ||| | |||||| | || ||| ||||||| || | ||||| Sbjct 123736 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123677 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || || |||||||| ||||| Sbjct 123676 CCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 124102 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 124043 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || |||||| |||||| | ||||| || || || Sbjct 124042 AGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 123983 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| || | | ||| | |||||| | | || ||| Sbjct 123982 ATTCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACT 123923 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||| ||||| || || ||||| || || || ||||| Sbjct 123922 TCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 122962 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 122903 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || |||||| |||||| | |||||||| || || Sbjct 122902 AGAGTACGTCCA-TCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 122844 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| ||||| | ||| | ||| || | | || || Sbjct 122843 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAAC 122784 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 122783 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 143033 |||||| |||| || ||||||||||| || ||||| || | || | || | |||| Sbjct 124541 AACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAGAGAGTACGTCCA-TCTT 124483 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | ||||| || |||||| | |||| | ||||| || || || || || |||||||| Sbjct 124482 CAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTT 124423 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 |||||| || | | ||| | |||||| | | || ||||||| || | ||| | Sbjct 124422 GAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACTTCAAGGGTGATCGTTT 124363 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || ||||| || || || ||||| Sbjct 124362 TACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001876744320