Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq255 156 3e-33 seq188 107 1e-18 >seq255 Length=939575 Score = 156 bits (172), Expect = 3e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || || ||||| |||||||| ||| || | || ||||||| Sbjct 828039 AACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTC 827980 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | ||||||||||| || || ||||| ||||||||||| Sbjct 827979 GAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTGTCTTG 827920 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| |||| || ||||| | |||||| ||||| ||||||||||| Sbjct 827919 AATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTAATGGTTTT 827860 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||| || || || |||||| Sbjct 827859 CCCAGTCAGAGTTTTCACGAAGATCTGCATA 827829 Score = 131 bits (144), Expect = 1e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || | | ||| ||||| |||||||| || || ||||| || || ||||||||| Sbjct 827602 TGCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGG 827543 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | ||||| | || |||||||| | ||||| || || ||||| || Sbjct 827542 AAAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTG 827483 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||||||||| || ||| ||| ||| |||| || |||||| | ||| | Sbjct 827482 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAA 827423 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 | || | ||| || ||||| ||||| || || || ||||| || ||||| |||| Sbjct 827422 CCTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCATGATTGA 827368 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || || ||||| |||||||| ||| || | || ||||||| Sbjct 827811 AACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTC 827752 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | ||||||||||| || || ||||| |||||||| || Sbjct 827751 GAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTG 827692 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| |||| || ||||| | ||| || || | || ||||||| Sbjct 827691 GATCTTAGCT-TTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATGGTTT 827633 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| | || || |||||||| ||||| Sbjct 827632 TTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| | | || || |||||||| || ||||| || || || ||||| Sbjct 828450 CCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAA 828391 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || |||| || | |||||||| ||| | || | ||||||||| || || Sbjct 828390 AGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGG 828331 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| |||||| ||| || ||| |||| || ||||| | ||| || Sbjct 828330 ATGCCTTCTTTGTCCTGAATTTTAGCT-TTGACATTTTCAATCGTATCCGAAGCTTCAAC 828272 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| || || ||||| || || || || |||||| Sbjct 828271 TTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCATA 828223 >seq188 Length=1630868 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || ||||||||||| ||| | | ||||||| | ||| Sbjct 124079 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCAAGTTG 124020 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || ||||| ||| |||||||||||||| |||||| Sbjct 124019 CTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTT 123960 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| ||||||| || ||| || || || | ||| || ||||| || || Sbjct 123959 AGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTGCCAGT 123900 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| ||||| || ||||| Sbjct 123899 TAACGTTTTAACAAAGATCTGCAT 123876 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 122939 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 122880 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || || || ||| |||||||| || || |||||| Sbjct 122879 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 122820 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| |||| || ||||| || || || | ||| ||||| || || || Sbjct 122819 GGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTCCCAGT 122760 Query 15340 CAGAGTTTTTACAAAAATTTGCAT-ATTT----GAAAATAAAATTTT 15381 || ||| || || ||||| ||||| |||| |||| |||||||| Sbjct 122759 CAAAGTCTTCACGAAAATCTGCATGATTTACTGTAAAAAAAAATTTT 122713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 123167 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 123108 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || || || ||| |||||||| || || |||||| Sbjct 123107 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123048 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| |||| || || || ||| || || | ||| ||||| || ||||| Sbjct 123047 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 122988 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 122987 AAGAGTCTTGACGAATATCTGCAT 122964 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 123395 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 123336 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || || || ||| |||||||| || || |||||| Sbjct 123335 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123276 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| |||| || || || ||| || || | ||| ||||| || ||||| Sbjct 123275 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 123216 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 123215 AAGAGTCTTGACGAATATCTGCAT 123192 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 123623 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 123564 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || || || ||| |||||||| || || |||||| Sbjct 123563 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123504 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | |||||| |||| || || || ||| || || | ||| ||||| || ||||| Sbjct 123503 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 123444 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 123443 AAGAGTCTTGACGAATATCTGCAT 123420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170477819416