Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq188 89.7 3e-13 seq255 87.8 1e-12 >seq188 Length=1630868 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | || || || || || || ||||||||||| | | | || || || Sbjct 123172 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123113 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||||| ||| || || | ||||| || | || || ||||| || || | Sbjct 123112 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123053 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| ||| ||||||||| || || ||| || || || || || ||| Sbjct 123052 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 122993 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || ||||| || ||||| Sbjct 122992 CCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | || || || || || || ||||||||||| | | | || || || Sbjct 123400 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123341 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||||| ||| || || | ||||| || | || || ||||| || || | Sbjct 123340 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123281 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| ||| ||||||||| || || ||| || || || || || ||| Sbjct 123280 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123221 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || ||||| || ||||| Sbjct 123220 CCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | || || || || || || ||||||||||| | | | || || || Sbjct 123628 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123569 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||||| ||| || || | ||||| || | || || ||||| || || | Sbjct 123568 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123509 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| ||| ||||||||| || || ||| || || || || || ||| Sbjct 123508 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123449 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || ||||| || ||||| Sbjct 123448 CCTGTAAGAGTCTTGACGAATATCTGCAT 123420 >seq255 Length=939575 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| |||||||| | || || ||||| || ||||||||||| || | | | || Sbjct 827586 CAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCATC 827527 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || || || |||||||| | || ||||||||||| || Sbjct 827526 TTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTC 827467 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| || || ||| ||| || ||| | || ||| || || || || Sbjct 827466 CTGGATCTTGGCC---TTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGAT 827410 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||||||| ||||| || || || || || |||||| || Sbjct 827409 TGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCATGATT 827370 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || || || | ||||| || | || || ||||| || ||||| |||||||| Sbjct 828450 CCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAA 828391 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | ||| |||| || || || || |||| |||||| || || | ||| Sbjct 828390 AGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGG 828331 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 ||||||||||| || ||| ||| || ||| |||||| || | || ||| Sbjct 828330 ATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACT 828271 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || ||||| || || ||||| || ||||| || ||||| Sbjct 828270 TCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769923038448