Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq255 93.3 3e-14 seq188 89.7 4e-13 >seq255 Length=939575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||| || ||||| ||||| |||||||| || |||| | ||||||||| Sbjct 827756 TCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTA 827697 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| || || ||| || | ||| |||||||| | || || |||| || || Sbjct 827696 TCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATG 827637 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| || ||||| ||||| ||||| || |||||| Sbjct 827636 GTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCATG 827601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | | ||| || |||||||| ||||| ||||| |||||||| |||||| Sbjct 827600 CCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAA 827541 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| |||| || || || ||||| ||||| || |||||||| | || Sbjct 827540 AGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGA 827481 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| || || || ||||| | ||| ||||| | | || || Sbjct 827480 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACC 827421 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || |||||||| || || | ||||||||||| || |||||| Sbjct 827420 TCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCATG 827373 >seq188 Length=1630868 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||||| ||||||||||| || |||| || |||| || Sbjct 123856 ACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCCTCA 123797 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||| ||||| ||||||| ||||| || | || | ||||| |||||| | Sbjct 123796 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123737 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| || |||| | || || || | || || || || Sbjct 123736 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123677 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| || ||||| ||||| Sbjct 123676 CCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || ||| || || ||||| || ||||| | ||| |||| || Sbjct 122944 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 122885 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||| ||||| ||||||| ||||| || | || | ||||| |||||| | Sbjct 122884 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 122825 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| ||||| | | ||| || || | || || || || Sbjct 122824 ATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTC 122765 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || ||||||||||| || || |||||| Sbjct 122764 CCAGTCAAAGTCTTCACGAAAATCTGCATG 122735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354769056068448