Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1536 159 4e-34 seq502 100 3e-16 seq1819 93.3 5e-14 >seq1536 Length=30485 Score = 159 bits (176), Expect = 4e-34 Identities = 246/345 (71%), Gaps = 7/345 (2%) Strand=Plus/Minus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||| |||| ||| | | |||| |||||||||||||||||||| | |||||||| | Sbjct 7222 GGATATGGATCATATTGTTCTAATTTAAAATCTTCAAATTTAAAATTAAATAAATTAGTA 7163 Query 6760 GACtttttttttAATAT-TACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTT 6818 | ||||| |||||| || || || | | |||| | || | |||||||||| || Sbjct 7162 -ATATTTTTATTAATAACTAAAATTGGCAATGATTTTGGTTTTCTACTTAATTGTTCATT 7104 Query 6819 TATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACC 6878 || | | ||||| ||||||||||||||| |||| |||||||||||||| || Sbjct 7103 AATTTGTGAAAAATGATTACTATAAATATGAGCATCACCTAAAGTATGAATAAATTCTCC 7044 Query 6879 TGGTTTCATATCAACA-GCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACAT 6937 | | | ||| | ||| ||| || | | ||||||||||||||||||||| | || Sbjct 7043 TAG-CTGATAGCCACATATTTGTGCTAACATTATTGTTAATAATGCATAAGAAGCAATAT 6985 Query 6938 TAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATAT 6997 ||||||| || ||||| |||||||| | |||||| ||||||||||||| | | Sbjct 6984 TAAAAGGAACTCCTAAAAAAATATCTGCACTACGTTGATATAATTGACAAGATAATTTTT 6925 Query 6998 TGTCTATAG---CATAAAATTGACACAATACATGACATGGAGGTA 7039 | || || | ||||||||| || ||||||||| |||| Sbjct 6924 TATCATCAGAAACGTAAAATTGAATTAAAGTATGACATGGTGGTA 6880 >seq502 Length=146425 Score = 100 bits (110), Expect = 3e-16 Identities = 185/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 7137 ATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCT 7196 |||| |||| || ||| ||||| ||| | || ||||| | || ||||||| || Sbjct 99900 ATCTCTACCTTGCCCTGAATAATCAGTGTTCATATCGATATACTGTGCACCAAAATTTCG 99959 Query 7197 CCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCG 7256 ||||||||| ||||||| |||||| | ||||||||| || | | || | | || | Sbjct 99960 CCATTGAAATCCATAAACAGGACCGAGATCACCTTCCTCCCTGTCATCATAGCCACAGGA 100019 Query 7257 ATTTA-AATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAAT 7315 ||||| || | | | || | || |||||||||||||| ||| ||| |||| | | Sbjct 100020 ATTTAGAAATTCACGT-GAACTATTTGCATCCCAAATATGAACACCTTTACTTGACAGTT 100078 Query 7316 TTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAA 7375 | || ||| || |||||| | | |||||||| | ||| || || | || | ||||| Sbjct 100079 CTTTAGCATTAGTCGATCCTCTGATAAACCATAATAATTCCTCCACAACCCCTCTCCAAA 100138 Query 7376 ACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 | | | ||||| || || || || ||| Sbjct 100139 AGACACGCTTTGTCGTCAACAATGGAAAT 100167 >seq1819 Length=565358 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/208 (70%), Gaps = 12/208 (6%) Strand=Plus/Minus Query 164725 CATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAA---AAAACGTGG------TGAT 164775 ||| || || | ||||||||||| |||||| ||||||| || | || | || Sbjct 14002 CATATTCTTATCTTTGATGAGATTGATGCTATTTGCAAGTCAAGAGGTAGCGTAGCTGGA 13943 Query 164776 AATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAA 164832 |||| | | |||||| | || ||||| || ||||| | || || |||||||||||| Sbjct 13942 AATACTGGAGTGCATGATACTGTTGTTAACCAATTGCTAGCCAAGATTGATGGTGTAGAA 13883 Query 164833 TCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCT 164892 || ||||||||| | ||| | ||||||||||| || || | |||||||| ||| Sbjct 13882 CAATTGAATAATATTCTCATTATTGGTATGACCAATAGAAGGGACATGATTGATGAAGCT 13823 Query 164893 TTATTACGACCTGGTCGATTAGAATTGA 164920 || | || || || || ||||| ||| Sbjct 13822 TTGCTTCGTCCCGGAAGACTAGAAGTGA 13795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595857281961600