Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq254 251 4e-62 seq1890 95.1 7e-15 seq1423 86.0 3e-12 >seq254 Length=4355184 Score = 251 bits (278), Expect = 4e-62 Identities = 430/620 (69%), Gaps = 9/620 (1%) Strand=Plus/Plus Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589 ||||||||| | || | | |||||||||||||||||| || || | || | || Sbjct 3186116 GCTTTTTTTTTAAATCGTGCTGCTGTAAAAATGGCAAATATAGACAAAGCCTGTGACTT- 3186174 Query 3590 GTATTTACACGATTGAATGATGGATCAAA-----TGAATTGATATATTTTGCTGACGTAT 3644 ||||| ||| | | | ||| ||| ||| || |||||||||| ||||| | Sbjct 3186175 -TATTTTCACAAATCCTAAAACGATAAAAAGCGATGAGTTACTATATTTTGCCGACGTCT 3186233 Query 3645 GCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAG 3704 | ||||||||||| || || || ||||| | | |||| ||||| ||| || |||| Sbjct 3186234 GTGCTGGTCCAGGAGGATTTAGCGAATACGTCCTGTGGAAGAAGAAGTGGCATGCAAAAG 3186293 Query 3705 GTTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAACAGATTTTACG-ATAAC 3763 | | ||| | || ||| || | || |||||| || | | ||||| | | || Sbjct 3186294 GATTCGGTTTCACATTAAAAGACGAGAACGATTTTAAATTAGATGACTTTTATGCAGGAC 3186353 Query 3764 TTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCA 3823 | | ||||||| || || | |||||| || | || || ||| | || | || Sbjct 3186354 CCTGTG-AAACTTTTCATCCATTTTATGGACCTAAAGAAGACGGCAATGTTTATGACCCA 3186412 Query 3824 CAAAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACAT 3883 | ||||| ||| ||| | | || | |||||| | | || | ||| || ||||| Sbjct 3186413 GAGAATCAAAAATCTTTCTATAAATTAATTATGGAGCACACTAATGGACTGGGATTACAT 3186472 Query 3884 TTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTA 3943 ||||||||| | || ||||| || || ||||| || ||||||||||| ||||| || ||| Sbjct 3186473 TTTATGATGTCGGATGGTGGATTTTCTGTTGATGGACAAGAAAATATACAAGAGATTTTA 3186532 Query 3944 TCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGT 4003 |||||| | | ||| | || ||||| ||| | ||| | ||||| || ||| ||||||| Sbjct 3186533 TCGAAACAATTATATCTCTGCCAATGCTTAGTAGCACTTATGATAGTAAGAACTGGTGGT 3186592 Query 4004 CATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTG 4063 || | ||| | || || |||||| | |||||||| || ||||||||| | | || || Sbjct 3186593 CACTTTGTCACAAAGTTATTCGATCTCTTTACACCGTTCAGTGCTGGTCTTATATACTTA 3186652 Query 4064 ATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAAT 4123 |||||| ||| ||| || |||||||| ||||||||| ||||||| |||| || ||| Sbjct 3186653 ATGTATCGATGCTTTGATAAAATTTGTATATTCAAACCAAATTCATCAAGACCAGCAAAT 3186712 Query 4124 TCTGAAAGATATTTGGTGTG 4143 || ||| ||||| | || || Sbjct 3186713 TCCGAACGATATCTCGTATG 3186732 >seq1890 Length=15584 Score = 95.1 bits (104), Expect = 7e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 5923 CAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGC 5982 ||||| || || ||| |||| |||||| |||||||| ||||||||||| || ||||| Sbjct 9097 CAGATCTGCGCTGCTTACCCAGAAGGTGGCAAAGACGCCTGCCAAGGTGACTCTGGTGGG 9038 Query 5983 CCGTTAGTTGTCGATAACCGCTTAGCTGGTATCGTGTCATGGGGTAATGGATGTGGTCGT 6042 || | || ||||| |||| | |||||||| || || ||||| || ||||| | ||| Sbjct 9037 CCACTGGTCATCGATGGCCGCCTTGCTGGTATTGTTTCCTGGGGCAACGGATGCGCTCGG 8978 Query 6043 ACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTTCCGACACTGGAT 6092 | |||| || || | || |||||| | || | ||| ||||||| Sbjct 8977 CCTGGATTCCCTGGTGTCTATACTGAAGTAGCTTATTACCGCAACTGGAT 8928 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 5947 GGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTA 6006 ||||| || ||||| ||||| ||||| || |||||||| | | || || ||| | Sbjct 1023 GGTGGCAAGGACGCTTGCCAGGGTGACTCTGGTGGCCCACTTGCCATCAATGGCCGTCTT 964 Query 6007 GCTGGTATCGTGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACT 6066 |||||||| || ||||||||||||||||| | || | |||| || || || |||||| Sbjct 963 GCTGGTATTGTATCATGGGGTAATGGATGCGCCCGCCCTGGATTCCCTGGTGCCTACACT 904 Query 6067 GAAATCGCGCCGTTCCGACACTGGATT 6093 || | || | ||||| |||||||| Sbjct 903 GAGGTTGCTGCCTTCCGTGACTGGATT 877 Score = 86.0 bits (94), Expect = 3e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 5947 GGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTA 6006 ||||| || ||||| ||||| ||||| || || ||||| | | || || ||| | Sbjct 6328 GGTGGCAAGGACGCTTGCCAGGGTGACTCTGGCGGCCCACTTGCCATCAATGGCCGTCTT 6269 Query 6007 GCTGGTATCGTGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACT 6066 |||||||| || ||||||||||||||||| | || | |||| || || || |||||| Sbjct 6268 GCTGGTATTGTCTCATGGGGTAATGGATGCGCCCGCCCTGGATTCCCTGGTGCCTACACT 6209 Query 6067 GAAATCGCGCCGTTCCGACACTGGATT 6093 || | || | ||||| |||||||| Sbjct 6208 GAGGTTGCTGCCTTCCGTGACTGGATT 6182 >seq1423 Length=10947 Score = 86.0 bits (94), Expect = 3e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 5947 GGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTA 6006 ||||| || ||||| ||||| ||||| || || |||||| | | || || ||| | Sbjct 1284 GGTGGCAAGGACGCTTGCCAGGGTGACTCTGGCGGCCCGCTTGCCATCAATGGCCGTCTT 1343 Query 6007 GCTGGTATCGTGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACT 6066 |||||||| || ||||||||||| ||||| | || | |||| || || || |||||| Sbjct 1344 GCTGGTATTGTATCATGGGGTAACGGATGCGCCCGCCCTGGATTCCCTGGTGCCTACACT 1403 Query 6067 GAAATCGCGCCGTTCCGACACTGGATT 6093 || | || | ||||| |||||||| Sbjct 1404 GAGGTTGCTGCCTTCCGTGACTGGATT 1430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276546939897928