Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq254 120 2e-22 seq674 109 3e-19 seq991 104 1e-17 seq342 98.7 5e-16 seq691 95.1 6e-15 >seq254 Length=4355184 Score = 120 bits (132), Expect = 2e-22 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 3165363 AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3165304 Query 11512 CAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| Sbjct 3165303 CAACTGAGCTAATGGGCCGT 3165284 >seq674 Length=1409676 Score = 109 bits (120), Expect = 3e-19 Identities = 94/116 (81%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 11420 AATCCAGGGAAATATAG---AATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCG 11473 || |||| | || |||| |||| | |||||| ||| ||||| |||| |||||| Sbjct 1037289 AAACCAGAGGAAAATAGGAAAATTGTTCAAAAATTAAAAAGCTGGCCTATGAGGGGATCG 1037230 Query 11474 AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1037229 AACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1037174 >seq991 Length=624847 Score = 104 bits (114), Expect = 1e-17 Identities = 78/90 (87%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| |||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 88576 AAGAAAAAA--AAATGTGGCCCGTGAGGGGATCGAACCCTCGACCTTCGCGTTATTAGCA 88519 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||| ||||||||| |||| Sbjct 88518 CGACGCTCTAACCAGCTGAGCTAACAGGCC 88489 >seq342 Length=197406 Score = 98.7 bits (108), Expect = 5e-16 Identities = 86/105 (82%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 11429 AAATATAGAATT---AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACC 11484 |||||| |||| | ||||||| || | |||||| ||| |||||||||| |||||| Sbjct 195370 AAATATTTAATTTGAAGTAAAAAA--AAGTGTGGCCCGTGAGGGGATCGAACCCTCGACC 195313 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| | || ||||||||| |||| Sbjct 195312 TTCGCGTTATTAGCACGACGCTCTAATCAGCTGAGCTAACAGGCC 195268 >seq691 Length=1921709 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||||||||||||||||||||||| |||| | Sbjct 29842 TGGCCCGTGGGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 29901 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 29902 TGAGCTAACAGGCC 29915 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| |||||||||||||||||||||||||||||| |||| | Sbjct 30857 TGGCCCGTGGGGGGATCGAACCCTCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 30916 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 30917 TGAGCTAACAGGCC 30930 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484902638176