Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq255 138 1e-27 seq188 118 1e-21 >seq255 Length=939575 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | || ||||| | ||||||||||||||| | ||| || ||| Sbjct 828056 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGG-- 827999 Query 94841 ATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || || || || ||||| || ||||||| || | |||||||||||||| Sbjct 827998 AGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 827939 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||||||||| | |||||| |||||||| | | || || | || | Sbjct 827938 GAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTA 827879 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || |||||||| ||||| ||||||||||| ||||||||||| Sbjct 827878 CTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 114 bits (126), Expect = 1e-20 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | || ||||| | ||||||||||||||| | ||| || ||| Sbjct 827828 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGG-- 827771 Query 94841 ATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || || || || ||||| || ||||||| || | |||||||||||||| Sbjct 827770 AGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 827711 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| |||||||| || | || || || || || | | ||| || | |||| Sbjct 827710 GAATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGA 827651 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||||||||| || | || || ||||| |||||||||| Sbjct 827650 CTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCATGC 827600 Score = 107 bits (118), Expect = 2e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| | | || ||| ||||| || | || ||||| || || | Sbjct 827613 AAAAATCTGCATGCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAAT 827554 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || |||||| | || | ||| |||||||| || || ||||||| |||| || Sbjct 827553 ATTGTAATCGGAAAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTG 827494 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| ||||||||||| | || || |||||||| | | || || Sbjct 827493 CTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATC 827434 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| |||||||| ||||| || ||||||||||||||||| Sbjct 827433 GGAAGCTTCAACCTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Query 95008 GCTT 95011 | || Sbjct 827373 GATT 827370 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| | ||| || ||||| || | |||||||| | || ||||| || || | ||||| Sbjct 828457 TTAGATTCCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATA 828398 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| | || | |||||||||||||| ||| | || |||| | ||| ||||| Sbjct 828397 ATCAGAAAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATC 828338 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || ||||||||||| | |||||| || ||||| | | || || | Sbjct 828337 AGGGGGGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGC 828278 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| ||||| ||||| ||||| ||||| ||||||||||| Sbjct 828277 TTCAACTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 >seq188 Length=1630868 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | ||||||||| || || | ||||| || ||| |||| | ||||| Sbjct 123856 ACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAG--ATAATGTTCGGCCATCCT 123799 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||||||||| ||||||| || || ||||||||||| || || ||||| || || | Sbjct 123798 CAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTT 123739 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || || || | | ||||| | | || || |||| |||||||| | Sbjct 123738 GAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCT 123679 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || |||||||| Sbjct 123678 TTCCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | ||||||||| || || | || || || ||| |||| | ||||| Sbjct 124312 ACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAG--ATAATGTTCGGCCATCCT 124255 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||||||||| ||||||| || || ||||||||||| || || ||||| || || | Sbjct 124254 CAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTT 124195 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || || || | | ||||| | | || || |||| |||||||| | Sbjct 124194 GAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCT 124135 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || |||||||| Sbjct 124134 TTCCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| ||||| | |||| | || || || || ||||| Sbjct 124072 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCA 124013 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||| ||||| || || ||||||||||| | |||||| ||||| Sbjct 124012 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTC 123953 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | || || |||| ||||| ||||| ||||| | ||| Sbjct 123952 ACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTGCCAGTTAACGTT 123893 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 123892 TTAACAAAGATCTGCAT 123876 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || || | ||| | || ||||| | ||| ||||| ||||| | || || || | Sbjct 124559 TCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTC--T 124502 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || | ||| || || || ||||| |||| || || || ||||| ||||| Sbjct 124501 GAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGT 124442 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || || |||||||| | |||||| ||||| || | | ||||||| || Sbjct 124441 GGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCA 124382 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||| ||||| ||||| | ||||| |||||||||||||| Sbjct 124381 ACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| ||||| | ||| ||| || || || ||||| Sbjct 123160 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 123101 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||||||||| || || ||||| || || | |||||| || || Sbjct 123100 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 123041 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | || || |||| |||||||| ||||| |||||||| Sbjct 123040 ACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTC 122981 Query 94991 TTCACAAAGATCTGCAT 95007 || || || |||||||| Sbjct 122980 TTGACGAATATCTGCAT 122964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| ||||| | ||| ||| || || || ||||| Sbjct 123388 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 123329 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||||||||| || || ||||| || || | |||||| || || Sbjct 123328 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 123269 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | || || |||| |||||||| ||||| |||||||| Sbjct 123268 ACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTC 123209 Query 94991 TTCACAAAGATCTGCAT 95007 || || || |||||||| Sbjct 123208 TTGACGAATATCTGCAT 123192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| ||||| | ||| ||| || || || ||||| Sbjct 123616 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 123557 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||||||||| || || ||||| || || | |||||| || || Sbjct 123556 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 123497 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | || || |||| |||||||| ||||| |||||||| Sbjct 123496 ACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTC 123437 Query 94991 TTCACAAAGATCTGCAT 95007 || || || |||||||| Sbjct 123436 TTGACGAATATCTGCAT 123420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| ||||| | ||| ||| || || || ||||| Sbjct 122932 GTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCA 122873 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || ||||||||||| || || ||||| || || | |||||| || || Sbjct 122872 GCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTT 122813 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || |||| || || |||| |||||||| || ||||| | ||| Sbjct 122812 ACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTC 122753 Query 94991 TTCACAAAGATCTGCATGCTT 95011 ||||| || ||||||||| || Sbjct 122752 TTCACGAAAATCTGCATGATT 122732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448280127207360