Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq372 212 1e-50 seq227 197 2e-46 seq219 194 3e-45 seq1026 178 2e-40 seq1931 167 4e-37 seq822 167 4e-37 seq1921 154 2e-33 seq1335 154 2e-33 seq1183 154 2e-33 seq364 154 2e-33 seq1808 145 1e-30 seq1805 145 1e-30 >seq372 Length=707578 Score = 212 bits (234), Expect = 1e-50 Identities = 207/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | ||||||||||||||||||||||||||||||||| || || Sbjct 342000 GCCAAGCGCCATAGAAAAGTTCTTCGAGATAACATCCAAGGAATCACCAAGCCTGCCATT 341941 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||||||||| ||||||||| | ||||| ||| | || ||||| | | Sbjct 341940 CGTCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATATCTGGCTTGATTTACGAAGAAACT 341881 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| ||||||| | | ||| |||| |||||| || |||||||||| Sbjct 341880 CGTGGCGTCTTGAAAGTCTTCCTTGAAAACGTAATCCGAGATGCTGTCACCTATACCGAG 341821 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | || || || || | |||||| | |||||||| | || | ||||| Sbjct 341820 CACGCAAAAAGGAAAACAGTTACTGCTATGGATGTAGTCTATGCCCTTAAGAGGCAAGGA 341761 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||| || ||||| Sbjct 341760 CGCACCCTCTATGGTTTCGGTGGTTAA 341734 >seq227 Length=2249845 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||| | | | |||||| |||||||||||||| ||||| || || |||||| Sbjct 428654 GCGAAGCGACATAGAAAAGTTCTTCGCGATAACATCCAAGGTATCACTAAACCGGCTATC 428595 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||| || ||||||||| | || || || |||||||||||| | Sbjct 428594 CGTCGTCTGGCTCGTCGTGGAGGCGTCAAGCGTATTTCCGGTCTGATCTATGAAGAGACT 428535 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || || ||| | ||||| | | ||| || | ||||||| || ||| || || Sbjct 428534 CGCGGCGTATTAAAGGTTTTCCTGGAAAACGTAATTCGTGATGCTGTCACCTACACGGAA 428475 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | || ||||| || | |||||| |||| || || |||||||| || || Sbjct 428474 CACGCCAAGAGAAAAACTGTAACGGCTATGGATGTCGTATACGCTTTGAAACGCCAGGGT 428415 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||||||||| ||||| Sbjct 428414 CGAACTCTTTATGGTTTTGGTGGTTAA 428388 >seq219 Length=3408353 Score = 194 bits (214), Expect = 3e-45 Identities = 191/247 (77%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || || |||||||| ||||| |||||||||||||||||||| Sbjct 2720509 TCTTCGTGATAACATCCAGGGTATAACCAAGCCTGCTATTCGTCGTCTGGCTCGTCGTGG 2720450 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | ||||| ||| | |||||||| | ||||| ||| ||||| |||| Sbjct 2720449 TGGTGTCAAGCGTATATCTGGCTTGATTTATGAAGAAACTCGTGGTGTCCTGAAGGTCTT 2720390 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | |||||| |||||| | || ||||| |||||||| | || || || Sbjct 2720389 CCTTGAAAATGTTATCAGAGATGCTGTAACTTACACCGAACACGCTAAGAGAAAAACCGT 2720330 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || ||||| | ||||| || || || | | ||||||||||| Sbjct 2720329 CACGGCTATGGATGTGGTTTATGCTCTTAAACGACAGGGTCGCACTCTGTATGGTTTTGG 2720270 Query 16693 AAGTTAA 16699 | ||||| Sbjct 2720269 AGGTTAA 2720263 >seq1026 Length=2408585 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | |||||| ||||| || |||||||| || ||||| |||||| Sbjct 1355380 GCGAAGCGTCATAGAAAAGTTCTTCGTGATAATATTCAAGGAATTACGAAGCCTGCTATC 1355321 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| | ||||| ||||| ||| |||| || | | |||||||| | | Sbjct 1355320 CGTCGTTTGGCTCGCAGAGGTGGCGTCAAACGTATCTCCGGTCTCATTTATGAAGAAACT 1355261 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| |||| || | | ||| |||| |||||| | |||||| || Sbjct 1355260 CGTGGCGTCCTGAAGGTCTTTCTTGAAAACGTCATCCGTGATGCAGTAACCTATACTGAA 1355201 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||| || ||||||| | |||||||| | ||||| ||||| Sbjct 1355200 CACGCAAAGAGGAAGACTGTTACAGCCATGGACGTAGTCTATGCTCTCAAACGCCAAGGA 1355141 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | ||||| ||||| |||||| Sbjct 1355140 CGTACCTTGTATGGATTTGGTGGTTAAT 1355113 >seq1931 Length=2651 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||| || ||||| ||||| |||||||| || || |||||| Sbjct 241 GCCAAGCGTCATAGAAAGGTTCTCCGTGATAATATCCAGGGAATCACAAAACCTGCTATC 300 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || |||||||| || || ||| | || || || | || ||||| | | Sbjct 301 CGCCGCCTGGCACGCCGTGGTGGTGTTAAACGTATATCCGGTTTAATTTACGAAGAAACT 360 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || || ||| ||||| | |||||| | || |||||| Sbjct 361 CGTGGTGTACTGAAGGTATTTCTTGAGAATGTTATTCGTGATGCAGTTACTTACACCGAG 420 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | |||||||| || |||||||| | || ||||| |||||||||||||| Sbjct 421 CACGCCAAAAGGAAGACTGTGACTGCCATGGATGTGGTATATGCTTTGAAACGTCAAGGA 480 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 481 CGTACTCTCTACGGATTCGGTGGTTAA 507 >seq822 Length=18178 Score = 167 bits (184), Expect = 4e-37 Identities = 199/270 (74%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| || ||||||||||||||||| || || ||||| Sbjct 13223 GCGAAGCGTCACAGGAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAACCGGCTATT 13164 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||| || || || || ||| ||||||| || | || ||||| | | Sbjct 13163 CGCCGTTTGGCTCGTCGAGGCGGTGTTAAACGTATCTCTGGCCTGATTTACGAAGAAACT 13104 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || | || || | | || |||| |||||| || || ||||| Sbjct 13103 CGTGGTGTTCTTAAAGTGTTTCTGGAAAATGTCATCCGTGATGCAGTCACATACACCGAA 13044 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || |||||||| ||||||| | |||||||| ||||||||||||| Sbjct 13043 CATGCCAAGAGGAAAACTGTCACTGCCATGGACGTGGTCTATGCGCTGAAACGTCAAGGA 12984 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | ||||| ||||| |||||||| Sbjct 12983 CGCACTCTCTATGGCTTTGGTGGTTAATCT 12954 >seq1921 Length=5762 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| || |||||||| |||||||| ||||| ||||| Sbjct 1978 GCGAAGCGTCACAGGAAAGTTCTTCGTGACAACATCCAGGGAATCACGAAGCCTGCTATT 1919 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || || || || || || ||||||| || | || ||||||| Sbjct 1918 CGCCGTTTGGCTCGCCGAGGCGGTGTTAAACGCATCTCTGGCCTGATTTACGAAGAGACC 1859 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || |||| || | | || |||| |||||| | ||| ||||| Sbjct 1858 CGTGGTGTTCTCAAAGTCTTTCTGGAAAATGTCATCCGTGATGCAGTTACCTACACCGAA 1799 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || ||||| ||||||| | |||||||| ||||||||||||| Sbjct 1798 CATGCCAAGAGGAAAACCGTCACTGCCATGGACGTGGTCTATGCGCTGAAACGTCAAGGA 1739 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||| ||||| |||||| Sbjct 1738 CGCACTCTCTATGGCTTTGGTGGTTAAT 1711 >seq1335 Length=21790 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| || |||||||| |||||||| ||||| || || Sbjct 7151 GCGAAGCGTCACAGGAAAGTTCTTCGTGACAACATCCAGGGAATCACGAAGCCTGCCATT 7092 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || || || || || ||| ||||||| || | || ||||||| Sbjct 7091 CGCCGTTTGGCTCGCCGAGGCGGTGTTAAACGTATCTCTGGCCTGATTTACGAAGAGACC 7032 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || |||| || | | || |||| |||||| | || |||||| Sbjct 7031 CGTGGTGTTCTTAAAGTCTTTCTGGAAAATGTCATCCGTGATGCAGTTACGTACACCGAG 6972 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || ||||| ||||||| | |||||||| ||||||||||||| Sbjct 6971 CATGCCAAGAGAAAAACCGTCACTGCCATGGACGTGGTCTATGCGCTGAAACGTCAAGGA 6912 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||| ||||| |||||| Sbjct 6911 CGCACTCTCTATGGCTTTGGTGGTTAAT 6884 >seq1183 Length=18451 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| || |||||||| |||||||| ||||| ||||| Sbjct 237 GCGAAGCGTCACAGGAAAGTTCTTCGTGACAACATCCAGGGAATCACGAAGCCTGCTATT 296 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| | ||||| || || || || || || ||||||| || | || ||||||| Sbjct 297 CGCCGTTTAGCTCGCCGAGGCGGTGTTAAACGCATCTCTGGCCTGATTTACGAAGAGACC 356 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || |||| || | | || |||| |||||| | ||| ||||| Sbjct 357 CGTGGTGTTCTCAAAGTCTTTCTGGAAAATGTCATCCGTGATGCAGTTACCTACACCGAA 416 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || ||||| ||||||| | |||||||| ||||||||||||| Sbjct 417 CATGCCAAGAGGAAAACCGTCACTGCCATGGACGTGGTCTATGCGCTGAAACGTCAAGGA 476 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | ||||||| ||||| |||||| Sbjct 477 CGCACTCTTTATGGCTTTGGTGGTTAAT 504 >seq364 Length=1243768 Score = 154 bits (170), Expect = 2e-33 Identities = 197/269 (73%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| || |||||||| |||||||| ||||| ||||| Sbjct 25401 GCGAAGCGTCACAGGAAAGTTCTTCGTGACAACATCCAGGGAATCACGAAGCCTGCTATT 25460 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || || || || || ||| ||||||| || | || ||||||| Sbjct 25461 CGCCGTTTGGCTCGCCGAGGCGGTGTTAAACGTATCTCTGGCCTGATTTACGAAGAGACC 25520 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 |||| |||| | || |||| || | | || || | |||||| || || || ||||| Sbjct 25521 CGTGGTGTTCTTAAAGTCTTTCTGGAAAATGTCATACGTGATGCAGTTACA-TACACCGA 25579 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || || ||||| ||||||| | |||||||| ||||||||||||| Sbjct 25580 ACATGCCAAGAGGAAAACCGTCACTGCCATGGACGTGGTCTATGCGCTGAAACGTCAAGG 25639 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || |||||||| |||||| Sbjct 25640 ACGCACTCTCTACGGTTTTGGTGGTTAAT 25668 >seq1808 Length=2935 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| || |||||||| |||||||| ||||| ||||| Sbjct 2169 GCGAAGCGTCACAGGAAAGTTCTTCGTGACAACATCCAGGGAATCACGAAGCCTGCTATT 2228 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| | ||||| || || || || || || ||||||| || | || ||||| | Sbjct 2229 CGCCGTTTAGCTCGCCGAGGCGGTGTTAAACGCATCTCTGGCCTGATTTACGAAGAAACC 2288 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || |||| || | | || |||| |||||| | ||| ||||| Sbjct 2289 CGTGGTGTTCTCAAAGTCTTTCTGGAAAATGTCATCCGTGATGCAGTTACCTACACCGAA 2348 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || ||||| ||||||| | |||||||| ||||||||||||| Sbjct 2349 CATGCCAAGAGGAAAACCGTCACTGCCATGGACGTGGTCTATGCGCTGAAACGTCAAGGA 2408 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | ||||| ||||| |||||| Sbjct 2409 CGCACTCTCTATGGCTTTGGTGGTTAAT 2436 >seq1805 Length=5063 Score = 145 bits (160), Expect = 1e-30 Identities = 195/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | |||||| ||||||||||| |||||||| ||||| ||||| Sbjct 2385 GCGAAGCGTCATAGGAAAGTTCTTCGTGATAACATCCAGGGAATCACGAAGCCTGCTATT 2444 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||| || || || || || | ||||| || | || ||||||| Sbjct 2445 CGCCGTTTGGCTCGTCGAGGCGGTGTTAAACGCATTTCTGGCCTGATTTACGAAGAGACC 2504 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCGA 16611 |||| |||| | || | || || | | || |||| |||||| || || || ||||| Sbjct 2505 CGTGGTGTTCTTAAAGTGTTTCTGGAAAATGTCATCCGTGATGCAGTTACA-TACACCGA 2563 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | || || || || | ||||| | |||||||| | ||||||||||| Sbjct 2564 ACATGCCAAGAGGAAAACCGTTACTGCTATGGACGTGGTCTATGCGCTTAAACGTCAAGG 2623 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || |||||||| |||||| Sbjct 2624 ACGCACTCTCTACGGTTTTGGTGGTTAAT 2652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073393329368