Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq151 91.5 2e-14 seq135 80.6 4e-11 >seq151 Length=60078 Score = 91.5 bits (100), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 5763 GGTACCCGAGGGTAACAAGGCCTGTCGGGTAATAAGGCCTAAGTGATAGAAATGATATTT 5822 |||||||| |||||| ||||| |||||| |||||||||| ||||| |||| ||| || Sbjct 32003 GGTACCCGGGGGTAATAAGGCTTGTCGGCTAATAAGGCCAGAGTGAGGAAAATCATACTT 31944 Query 5823 AAAATAACCGCTTCTGCTAAAGCCTTCTCTAGTAGAAAAGTCTATT--ATAGAAATGTCG 5880 ||||||||| ||| ||| ||| | | || | | | || |||| ||| | |||||| Sbjct 31943 AAAATAACCACTTTCGCTCAAGGCCACATTA--ACAGACGTATATTGCATAAAGATGTCG 31886 Query 5881 CTACAAGT 5888 |||||||| Sbjct 31885 CTACAAGT 31878 >seq135 Length=928714 Score = 80.6 bits (88), Expect = 4e-11 Identities = 85/110 (77%), Gaps = 9/110 (8%) Strand=Plus/Minus Query 439 AATAGTATATTACACTACAAGAGCAGAAAGTTGAGATTCCTGCACTGCGGGCATCATGGC 498 ||||||||||||||||||||| ||||||| |||| || | |||||| || ||| Sbjct 271508 AATAGTATATTACACTACAAGGGCAGAAAACTGAGCTTTCGGCACTG-----TTC--GGC 271456 Query 499 ACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGTAGTGTATACTATTTTT 548 | |||||| ||| |||| || |||||| || ||||||||||||||| Sbjct 271455 A--CAGTTCCGGGTGCTCAGTTTACTGCCCGCGTGGTGTATACTATTTTT 271408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68321638985688