Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006651.1 Length=19161 Score E Sequences producing significant alignments: (Bits) Value seq364 120 4e-23 seq320 109 7e-20 seq1430 87.8 2e-13 seq1037 87.8 2e-13 seq377 80.6 3e-11 >seq364 Length=1243768 Score = 120 bits (132), Expect = 4e-23 Identities = 125/161 (78%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 3464 ATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCATG-TGCC 3522 |||||| ||||||||||||||||||||| |||| || | ||||||| || | |||| Sbjct 82865 ATAGTACATTACACTACAAGGGCAGAAAACTGAGTTTTCGGCACTGCTCGATAGAATGCC 82924 Query 3523 CGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATGT 3582 ||||||||||||||||| | | | ||||||| ||| |||| || |||||| ||| Sbjct 82925 TGAGGCGAAGCCGAGGGCCTTCTATCGAGCAGTTCCGGGTGCTCAGTTTACTGCCCGTGT 82984 Query 3583 AGTGTATACTATTTTTCTTGCTATGC---GGTCGAAAGTAC 3620 |||||||| | ||||||| ||| | |||||||||||| Sbjct 82985 GGTGTATACCAGTTTTCTT--TATACCATGGTCGAAAGTAC 83023 Score = 118 bits (130), Expect = 1e-22 Identities = 126/162 (78%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 4354 ATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTGCCATA-TGC 4412 |||||| ||||||||||||||||||||| | ||| || | ||||||| | | | ||| Sbjct 82865 ATAGTACATTACACTACAAGGGCAGAAAACT-GAGTTTTCGGCACTGCTCGATAGAATGC 82923 Query 4413 CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATG 4472 | ||||||||||||||||| | | | ||||||| ||| |||| || |||||| || Sbjct 82924 CTGAGGCGAAGCCGAGGGCCTTCTATCGAGCAGTTCCGGGTGCTCAGTTTACTGCCCGTG 82983 Query 4473 TAGTGTATACTAGTTTTCT---TACGATGCGGTCGAAAGTAC 4511 | |||||||| |||||||| ||| || |||||||||||| Sbjct 82984 TGGTGTATACCAGTTTTCTTTATACCAT--GGTCGAAAGTAC 83023 >seq320 Length=49550 Score = 109 bits (120), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 3463 AATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCA-TGTGC 3521 ||||||||||||||||||||||||||||| ||||| || | |||||| || | ||| Sbjct 39251 AATAGTATATTACACTACAAGGGCAGAAAATTGAGCTTTCGGCACTGTTCGATAGAATGC 39310 Query 3522 CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATG 3581 |||||||||| |||||| | | | | ||||||| ||| || | || |||||| | Sbjct 39311 CCGAGGCGAAACCGAGGACCTTCTATCGAGCAGTTCCGGGTGCTGAGTTTACTGCCCGCG 39370 Query 3582 TAGTGTATACTATTTTT 3598 | ||||||||||||||| Sbjct 39371 TGGTGTATACTATTTTT 39387 Score = 100 bits (110), Expect = 3e-17 Identities = 108/140 (77%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 4353 AATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTGCCATA--- 4409 ||||||||||||||||||||||||||||| || ||| || | |||||| | | ||| Sbjct 39251 AATAGTATATTACACTACAAGGGCAGAAAATT-GAGCTTTCGGCACTG--TTCGATAGAA 39307 Query 4410 TGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 4469 ||||||||||||| |||||| | | | | ||||||| ||| || | || |||||| Sbjct 39308 TGCCCGAGGCGAAACCGAGGACCTTCTATCGAGCAGTTCCGGGTGCTGAGTTTACTGCCC 39367 Query 4470 ATGTAGTGTATACTAGTTTT 4489 || |||||||||| |||| Sbjct 39368 GCGTGGTGTATACTATTTTT 39387 >seq1430 Length=21870 Score = 87.8 bits (96), Expect = 2e-13 Identities = 105/138 (76%), Gaps = 5/138 (4%) Strand=Plus/Minus Query 3464 ATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCA-TGTGCC 3522 ||||||||||||||||||||||||||| |||| || | ||||||| || | |||| Sbjct 1341 ATAGTATATTACACTACAAGGGCAGAACACTGAGCTTTCGGCACTGCTCGATAGAATGCC 1282 Query 3523 CGAGGCGAAGCCGAGGG-CATC-ATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 3580 ||||| |||||||||| | || || | ||||||| || || || |||||| Sbjct 1281 CGAGGATAAGCCGAGGGCCCTCGAT--CGAGCAGTTCCGGCTGCTTTGTTTACTGCCCGC 1224 Query 3581 GTAGTGTATACTATTTTT 3598 || ||||||||||||||| Sbjct 1223 GTGGTGTATACTATTTTT 1206 >seq1037 Length=5059 Score = 87.8 bits (96), Expect = 2e-13 Identities = 105/138 (76%), Gaps = 5/138 (4%) Strand=Plus/Minus Query 3464 ATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCA-TGTGCC 3522 ||||||||||||||||||||||||||| |||| || | ||||||| || | |||| Sbjct 3816 ATAGTATATTACACTACAAGGGCAGAACACTGAGCTTTCGGCACTGCTCGATAGAATGCC 3757 Query 3523 CGAGGCGAAGCCGAGGG-CATC-ATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 3580 ||||| |||||||||| | || || | ||||||| || || || |||||| Sbjct 3756 CGAGGATAAGCCGAGGGCCCTCGAT--CGAGCAGTTCCGGCTGCTTTGTTTACTGCCCGC 3699 Query 3581 GTAGTGTATACTATTTTT 3598 || ||||||||||||||| Sbjct 3698 GTGGTGTATACTATTTTT 3681 >seq377 Length=50575 Score = 80.6 bits (88), Expect = 3e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 3363 TAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAATGGTTGATTTGGCGTGGAATG 3422 |||| |||||||| ||||||||| ||||||| |||||| ||| ||||||||||||||| Sbjct 31211 TAAAATTTCAGCCCAATCAAAAGAGGTCAGGTTCAAAAGCGGTCGATTTGGCGTGGAATA 31152 Query 3423 CCCCATA 3429 |||| || Sbjct 31151 CCCCGTA 31145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61195401806112