Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq364 129 1e-25 seq320 107 3e-19 seq1430 91.5 2e-14 seq1037 91.5 2e-14 seq1554 82.4 1e-11 >seq364 Length=1243768 Score = 129 bits (142), Expect = 1e-25 Identities = 139/179 (78%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 20677 GTACTTTCGACC---GCATAGCAAGAAAAATAGTATACACTACATGGGCAGAAATTTGAG 20733 |||||||||||| | ||| ||||||| | |||||||| ||| |||||| || |||| Sbjct 83023 GTACTTTCGACCATGGTATA--AAGAAAACTGGTATACACCACACGGGCAGTAAACTGAG 82966 Query 20734 AGCCCTGAACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGGGCA-CATGGCGCGCAGTG 20792 ||| ||||||| | | | ||||||||||||||||| |||| | || |||||| Sbjct 82965 CACCCGGAACTGCTCGATAGAAGGCCCTCGGCTTCGCCTCAGGCATTCTATCGAGCAGTG 82906 Query 20793 CAGGAATCTCAACTTTCTGCCCTTGTAGTGTAATATACTATAT-CCAGAT--AGAAGTT 20848 | | || |||| ||||||||||||||||||||| |||||||| ||| || ||||||| Sbjct 82905 CCGAAAACTCAGTTTTCTGCCCTTGTAGTGTAATGTACTATATACCATATCAAGAAGTT 82847 Score = 127 bits (140), Expect = 3e-25 Identities = 128/162 (79%), Gaps = 7/162 (4%) Strand=Plus/Minus Query 5313 GTACTTTCGACCGCATAGTA---AGAAAACTAGTATACACTACATGGGCAGAAATTTGAG 5369 |||||||||||| || ||| |||||||| |||||||| ||| |||||| || |||| Sbjct 83023 GTACTTTCGACC--ATGGTATAAAGAAAACTGGTATACACCACACGGGCAGTAAACTGAG 82966 Query 5370 AGCCCTGAACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGGGCA-TATGGCGCGCAGTG 5428 ||| ||||||| | | | ||||||||||||||||| |||| | | || |||||| Sbjct 82965 CACCCGGAACTGCTCGATAGAAGGCCCTCGGCTTCGCCTCAGGCATTCTATCGAGCAGTG 82906 Query 5429 CAGGAATCTCAGACTTTCTGCCCTTGTAGTGTAATATACTAT 5470 | | || ||||| ||||||||||||||||||||| |||||| Sbjct 82905 CCGAAAACTCAG-TTTTCTGCCCTTGTAGTGTAATGTACTAT 82865 >seq320 Length=49550 Score = 107 bits (118), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 20699 AAAAATAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCATGATGC 20758 ||||||||||||||| || |||||| || | || ||| ||||||| | | | | Sbjct 39387 AAAAATAGTATACACCACGCGGGCAGTAAACTCAGCACCCGGAACTGCTCGATAGAAGGT 39328 Query 20759 CCTCGGCTTCGCCTCGGGCACA-TGGCGCGCAGTGCAGGAATCTCAACTTTCTGCCCTTG 20817 |||||| ||||||||||||| | || |||||| | || ||||| |||||||||||| Sbjct 39327 CCTCGGTTTCGCCTCGGGCATTCTATCGAACAGTGCCGAAAGCTCAATTTTCTGCCCTTG 39268 Query 20818 TAGTGTAATATACTAT 20833 |||||||||||||||| Sbjct 39267 TAGTGTAATATACTAT 39252 Score = 102 bits (112), Expect = 1e-17 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 5335 AAAACTAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCATGATGC 5394 |||| |||||||||| || |||||| || | || ||| ||||||| | | | | Sbjct 39387 AAAAATAGTATACACCACGCGGGCAGTAAACTCAGCACCCGGAACTGCTCGATAGAAGGT 39328 Query 5395 CCTCGGCTTCGCCTCGGGCA-TATGGCGCGCAGTGCAGGAATCTCAGACTTTCTGCCCTT 5453 |||||| ||||||||||||| | | || |||||| | || |||| | ||||||||||| Sbjct 39327 CCTCGGTTTCGCCTCGGGCATTCTATCGAACAGTGCCGAAAGCTCA-ATTTTCTGCCCTT 39269 Query 5454 GTAGTGTAATATACTATT 5471 |||||||||||||||||| Sbjct 39268 GTAGTGTAATATACTATT 39251 >seq1430 Length=21870 Score = 91.5 bits (100), Expect = 2e-14 Identities = 109/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 20699 AAAAATAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCAT-GATG 20757 ||||||||||||||| || |||||| || || || ||||||| | || || | Sbjct 1206 AAAAATAGTATACACCACGCGGGCAGTAAACAAAGCAGCCGGAACTGCTCG--ATCGAGG 1263 Query 20758 -CCCTCGGCTTCGCCTCGGGCACA-TGGCGCGCAGTGCAGGAATCTCAACTTTCTGCCCT 20815 |||||||||| ||||||||| | || ||||||| | || |||| ||||||||| Sbjct 1264 GCCCTCGGCTTATCCTCGGGCATTCTATCGAGCAGTGCCGAAAGCTCAGTGTTCTGCCCT 1323 Query 20816 TGTAGTGTAATATACTATATCCA 20838 |||||||||||||||||||| || Sbjct 1324 TGTAGTGTAATATACTATATGCA 1346 Score = 86.0 bits (94), Expect = 1e-12 Identities = 106/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 5335 AAAACTAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCAT-GATG 5393 |||| |||||||||| || |||||| || || || ||||||| | || || | Sbjct 1206 AAAAATAGTATACACCACGCGGGCAGTAAACAAAGCAGCCGGAACTGCTCG--ATCGAGG 1263 Query 5394 -CCCTCGGCTTCGCCTCGGGCATA-TGGCGCGCAGTGCAGGAATCTCAGACTTTCTGCCC 5451 |||||||||| |||||||||| | || ||||||| | || ||||| || |||||| Sbjct 1264 GCCCTCGGCTTATCCTCGGGCATTCTATCGAGCAGTGCCGAAAGCTCAGTGTT-CTGCCC 1322 Query 5452 TTGTAGTGTAATATACTAT 5470 ||||||||||||||||||| Sbjct 1323 TTGTAGTGTAATATACTAT 1341 >seq1037 Length=5059 Score = 91.5 bits (100), Expect = 2e-14 Identities = 109/143 (76%), Gaps = 5/143 (3%) Strand=Plus/Plus Query 20699 AAAAATAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCAT-GATG 20757 ||||||||||||||| || |||||| || || || ||||||| | || || | Sbjct 3681 AAAAATAGTATACACCACGCGGGCAGTAAACAAAGCAGCCGGAACTGCTCG--ATCGAGG 3738 Query 20758 -CCCTCGGCTTCGCCTCGGGCACA-TGGCGCGCAGTGCAGGAATCTCAACTTTCTGCCCT 20815 |||||||||| ||||||||| | || ||||||| | || |||| ||||||||| Sbjct 3739 GCCCTCGGCTTATCCTCGGGCATTCTATCGAGCAGTGCCGAAAGCTCAGTGTTCTGCCCT 3798 Query 20816 TGTAGTGTAATATACTATATCCA 20838 |||||||||||||||||||| || Sbjct 3799 TGTAGTGTAATATACTATATGCA 3821 Score = 86.0 bits (94), Expect = 1e-12 Identities = 106/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 5335 AAAACTAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCAT-GATG 5393 |||| |||||||||| || |||||| || || || ||||||| | || || | Sbjct 3681 AAAAATAGTATACACCACGCGGGCAGTAAACAAAGCAGCCGGAACTGCTCG--ATCGAGG 3738 Query 5394 -CCCTCGGCTTCGCCTCGGGCATA-TGGCGCGCAGTGCAGGAATCTCAGACTTTCTGCCC 5451 |||||||||| |||||||||| | || ||||||| | || ||||| || |||||| Sbjct 3739 GCCCTCGGCTTATCCTCGGGCATTCTATCGAGCAGTGCCGAAAGCTCAGTGTT-CTGCCC 3797 Query 5452 TTGTAGTGTAATATACTAT 5470 ||||||||||||||||||| Sbjct 3798 TTGTAGTGTAATATACTAT 3816 >seq1554 Length=169980 Score = 82.4 bits (90), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 17/127 (13%) Strand=Plus/Minus Query 18654 TAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGCGCCA-TATGCC 18712 |||||||||||||||||| |||||||| |||| || | ||||||| || | ||||| Sbjct 20708 TAGTATATTACACTACAAAGGCAGAAA-ACTGAGCTTTCGGCACTGCTCGATAGAATGCC 20650 Query 18713 CGAGGCGAAGCCGAGTAGT----------GTATACTAGTTTTCT---TACTATGCGGTCG 18759 ||||||||||||||| ||| |||||||| |||||| ||| || ||| | Sbjct 20649 CGAGGCGAAGCCGAGCAGTTCCGTGTGGCGTATACTATTTTTCTATATACCAT--GGTTG 20592 Query 18760 AAAGTAC 18766 ||||||| Sbjct 20591 AAAGTAC 20585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83278097260200