Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq248 98.7 7e-17 >seq248 Length=3919243 Score = 98.7 bits (108), Expect = 7e-17 Identities = 178/269 (66%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 4311 GGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAAT 4370 || |||||||||||||||| |||| | |||||||| || | || | ||| || || ||| Sbjct 1177312 GGGTCATTCCATGTCAAATCGACCAATGGTTGGAATCGATCTCTCTCGATTTGAATGAAT 1177371 Query 4371 TTTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCAGAGGANNNNNNNNNNNN 4430 ||| |||||| |||||||||||| | || ||| | || ||| Sbjct 1177372 TTTTGTCAGAAGTTTTCTTTTATCGTCAAAGGAA---ATATCAACGGAAAACAAAATTTT 1177428 Query 4431 NNNNNNCATTCAAAAGATATGCAAACTCAAAATTTTGCTATTTTTTCNNNNNNNNNNNNN 4490 ||| | || ||| | || | ||||||| | |||||| Sbjct 1177429 TGATATTTTTCGACAGTTATACGAAATTAAAATTTCACCATTTTTCGAATTTTTCAAGTT 1177488 Query 4491 TGTTTTTGGAATATCGCGAACGCTATTATAGATACAGGAATAGCCTTTCGTTTGTTTGAA 4550 ||||||| |||||| |||| ||||||||| |||| ||| | || |||||||| || Sbjct 1177489 TGTTTTTTAAATATCTCGAAAACTATTATAGTTACAAAAATGGGCTCGAGTTTGTTTTAA 1177548 Query 4551 AGAGGATACTTGGGGCTATCGaaaaaaaa 4579 || ||||| | |||||||| ||||||||| Sbjct 1177549 AGGGGATATTCGGGGCTAT-GAAAAAAAA 1177576 Score = 89.7 bits (98), Expect = 4e-14 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5067 GATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGGGTCAATTCCAACTGTA 5126 |||||||||||| ||||||| |||||| || || ||| | || | || |||||||| | Sbjct 1177395 GATAAAAGAAAACTTCTGACAAAAATTCATTCAAATCGAGAGAGATCGATTCCAACCATT 1177336 Query 5127 GGTCAATTTGACATGGAATGACCC 5150 |||| ||||||||||||||||||| Sbjct 1177335 GGTCGATTTGACATGGAATGACCC 1177312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35679206833600