Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq364 127 2e-25 seq320 102 9e-18 seq1430 86.0 7e-13 seq1037 86.0 7e-13 >seq364 Length=1243768 Score = 127 bits (140), Expect = 2e-25 Identities = 128/162 (79%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 4753 ATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATA-TGC 4811 |||||| ||||||||||||||||||||| ||||| || | ||||||| || | | ||| Sbjct 82865 ATAGTACATTACACTACAAGGGCAGAAAA-CTGAGTTTTCGGCACTGCTCGATAGAATGC 82923 Query 4812 CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCATG 4871 | ||||||||||||||||| | | | ||||||| ||| |||| || |||||| || Sbjct 82924 CTGAGGCGAAGCCGAGGGCCTTCTATCGAGCAGTTCCGGGTGCTCAGTTTACTGCCCGTG 82983 Query 4872 TAGTGTATACTAGTTTTCT---TACTATGCGGTCGAAAGTAC 4910 | |||||||| |||||||| ||| || |||||||||||| Sbjct 82984 TGGTGTATACCAGTTTTCTTTATACCAT--GGTCGAAAGTAC 83023 >seq320 Length=49550 Score = 102 bits (112), Expect = 9e-18 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 4752 AATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCATA-TG 4810 ||||||||||||||||||||||||||||| | |||| || | |||||| || | | || Sbjct 39251 AATAGTATATTACACTACAAGGGCAGAAAAT-TGAGCTTTCGGCACTGTTCGATAGAATG 39309 Query 4811 CCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 4870 ||||||||||| |||||| | | | | ||||||| ||| || | || |||||| Sbjct 39310 CCCGAGGCGAAACCGAGGACCTTCTATCGAGCAGTTCCGGGTGCTGAGTTTACTGCCCGC 39369 Query 4871 GTAGTGTATACTAGTTTT 4888 || |||||||||| |||| Sbjct 39370 GTGGTGTATACTATTTTT 39387 >seq1430 Length=21870 Score = 86.0 bits (94), Expect = 7e-13 Identities = 106/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 4753 ATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCA-TATGC 4811 ||||||||||||||||||||||||| || ||||| || | ||||||| || | |||| Sbjct 1341 ATAGTATATTACACTACAAGGGCAG-AACACTGAGCTTTCGGCACTGCTCGATAGAATGC 1283 Query 4812 CCGAGGCGAAGCCGAGGG-CATC-ATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 |||||| |||||||||| | || || | ||||||| || || || |||||| Sbjct 1282 CCGAGGATAAGCCGAGGGCCCTCGAT--CGAGCAGTTCCGGCTGCTTTGTTTACTGCCCG 1225 Query 4870 TGTAGTGTATACTAGTTTT 4888 || |||||||||| |||| Sbjct 1224 CGTGGTGTATACTATTTTT 1206 >seq1037 Length=5059 Score = 86.0 bits (94), Expect = 7e-13 Identities = 106/139 (76%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 4753 ATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCA-TATGC 4811 ||||||||||||||||||||||||| || ||||| || | ||||||| || | |||| Sbjct 3816 ATAGTATATTACACTACAAGGGCAG-AACACTGAGCTTTCGGCACTGCTCGATAGAATGC 3758 Query 4812 CCGAGGCGAAGCCGAGGG-CATC-ATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCA 4869 |||||| |||||||||| | || || | ||||||| || || || |||||| Sbjct 3757 CCGAGGATAAGCCGAGGGCCCTCGAT--CGAGCAGTTCCGGCTGCTTTGTTTACTGCCCG 3700 Query 4870 TGTAGTGTATACTAGTTTT 4888 || |||||||||| |||| Sbjct 3699 CGTGGTGTATACTATTTTT 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55806724926720