Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1554 156 5e-33 seq211 154 2e-32 seq295 95.1 2e-14 seq648 89.7 6e-13 >seq1554 Length=169980 Score = 156 bits (172), Expect = 5e-33 Identities = 182/244 (75%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 || || ||||| |||||||| | |||||||| || | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || |||||||||||||||||||| || | || ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | || || ||||| ||||||||||| ||||| || || |||||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 62454 AAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAA 62511 ||| ||| | | ||| ||||| || ||||| ||||| || | | |||||| ||| | Sbjct 4549 AAAGAATTCCGCACACC--ATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATA 4492 Query 62512 GATC 62515 |||| Sbjct 4491 GATC 4488 Score = 132 bits (146), Expect = 6e-26 Identities = 193/270 (71%), Gaps = 12/270 (4%) Strand=Plus/Minus Query 62735 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 62794 |||||| |||||||| || | | |||| || ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 62795 AATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTT 62851 |||| || | ||| |||||||| | | || ||| |||| ||| |||||||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATT--TTTG-TAACAGCCTTCAGTTT 3995 Query 62852 GAGAAAATCAAATCGC------CCATCTATTACAAACATGTTCAAGGCAACAGATGCCAG 62905 ||||||| || | || |||||||||| || | |||| ||||||| Sbjct 3994 TTCAAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAA 3935 Query 62906 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62965 ||||| || || || || | || | | ||| ||||| ||||| || || |||||||| Sbjct 3934 GTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACT 3875 Query 62966 ACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || ||| || |||||||||| ||| ||||| Sbjct 3874 ACTCTTAATTGTTCCTAAATGTTGCTGATT 3845 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || |||||||| || | ||| | |||| ||| | || || || ||||| ||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || ||||| | || ||||| || ||||| || |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 | || || || | ||||||||| || ||||| ||||| | | |||| | ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 | ||| ||| | |||| || |||||||||||||| || ||||| |||||| || || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 63831 TAAA 63834 |||| Sbjct 2803 TAAA 2800 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 |||| ||||||||||| | ||| |||| ||||||| |||||| ||||||| |||||| | Sbjct 3404 TATTTTTTTTAAGATCCAAGAATTCCATTATATCAGCATGCCATGGTTCCACGTATATAG 3345 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | ||||||| | |||||||| ||||| || | |||| || ||||| ||| Sbjct 3344 CAAATGCTCCAGGTCTCTTGTTTCCACCCTGGTCAACATATCGTGCCACATTATTGAAAA 3285 Query 63409 CTCTCAACATTGGAATAATACCGT 63432 | | | ||||||| | ||||| Sbjct 3284 GTTTGAGTATTGGAACCACACCGT 3261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||| || |||||||| |||| | | |||||||||| | || ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || ||||| | | ||||||||||| ||||||||||||||||| || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 || ||||| | || | |||||| |||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 |||| ||||| | | ||| ||||||||||| ||||| ||||| || ||||| || ||| Sbjct 4333 TATGTGCCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTT 4274 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62705 ||||| || | |||| || | ||| |||||| || ||||| |||||| | | | Sbjct 4273 TCGAAAATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAA 4214 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 | ||| || || || || || || | || ||||| Sbjct 4213 AGAAATGCATCGGCCAAGCCCTGTATTCCTATACC 4179 >seq211 Length=255845 Score = 154 bits (170), Expect = 2e-32 Identities = 301/444 (68%), Gaps = 3/444 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||||| || || ||||| ||||| | ||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || | |||||| ||| ||||||||||||||||| || || || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33502 |||| | | ||| || || || ||||||| ||||| ||| ||||||| || Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTAC 33562 | || || || || || | | || |||||||| |||||| | | | || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 33563 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 33622 || | | | || | || | || ||||||||| || || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 33623 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33682 | || ||||| || ||||| || | || || || | || |||||| || || |||| Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 33683 CCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 | | | ||| ||||| || || || || ||||||||||||||||||||||| || Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 33743 TAAAATATTTTTCGTCTGGTGTTA 33766 |||||| |||||| ||||| Sbjct 251804 TAAAATGACGTTCGTCATCTGTTA 251781 >seq295 Length=3859974 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 63657 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63716 ||||| | |||||| || ||||||||| || || ||| | || ||| ||| | | Sbjct 1466980 TCAGACATTAGATTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATA 1467039 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63776 || || | ||||| ||| ||||| ||||||||||||| ||| || ||||||| | Sbjct 1467040 GCAACTCTCATTATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGA 1467099 Query 63777 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63836 || || ||||| | |||||| ||||| ||||| || |||||| ||| | || | Sbjct 1467100 TAATTTTCTTCCAGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCGCGTCCATATACT 1467159 Query 63837 ATAACCGAGTTGAGTTTATC 63856 || || || || ||| |||| Sbjct 1467160 ATTACTGAATTTAGTATATC 1467179 >seq648 Length=307961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63724 || |||||| |||||||| || || || || || |||||| | || || | Sbjct 4094 TAAATTGTAAGTCTCAATGACTTTTTCAATGTCATCTTCGTGAATTGAAATAGCAACTCT 4153 Query 63725 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63784 ||||||||| |||||||||||||| || | |||| |||||| || | || || ||| Sbjct 4154 CATTAACATATGCTGAGGTCTTTCGACAACCTTGCCGTTTATCTTTAGTAAAAAGCTTTT 4213 Query 63785 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63844 ||||| |||||||| ||||| || || || |||||| || || || | || || || Sbjct 4214 TTCCAGTGTTTTAAAGCCAAAGTAATTATAATCAAAGTCGCGATCATATACTATTACAGA 4273 Query 63845 GTTGAGT 63851 || ||| Sbjct 4274 ATTTAGT 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931813204160