Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq1605 268 3e-67 >seq1605 Length=91930 Score = 268 bits (296), Expect = 3e-67 Identities = 682/1024 (67%), Gaps = 53/1024 (5%) Strand=Plus/Minus Query 25879 ATTATTAATCTCTATCACCGTTGAAAATAGAGTTTCTAACAATAACATAATCTACAGTAC 25938 |||||||| |||||| || ||||| | |||||||||||||||| ||| | Sbjct 28562 ATTATTAACGATCATCACCATTATTAATAGTACCTTTAACAATAACATAATC-ACATTTT 28504 Query 25939 GT-AATGATTTCAAGTCTTTTCCACCGGCATATGAAATTGAGCTTTGTAAATCTTGTTGC 25997 || |||| || ||||| ||||| ||||| ||||| | ||||||||||| || | Sbjct 28503 GTTAATGCAGATAAATCTTTACCACCAGCATAAGAAATAGCAGATTGTAAATCTTCTTCC 28444 Query 25998 ATTTCTTTTAAGGTATCCATTAATGACCCCTTATGTTCTACAAACAtttttttACCTTCT 26057 |||||||| | ||||| | ||| || |||| | |||| |||||||||||||| Sbjct 28443 ATTTCTTTATAAGTATCAGCAATTGAACCTTTATATGGAACAAGTATTTTTTTACCTTCA 28384 Query 26058 ACATTTTTATGTTCGCCTTTTTGAAATTCAGATGCACTACCAAAATATTCTTTATACTGT 26117 | |||||| ||| |||| | ||| | ||| |||||||||||||| || | Sbjct 28383 ATATTTTTCGCTTCCGCTTTGTTAAAAATACTTGCTGATCCAAAATATTCTTTGTAAGAT 28324 Query 26118 TTACCATCAAGTTCTACAGTTTCACCAGGTGATTCTTCGTGTGCCGC--AAATAATGAAC 26175 | ||||| | | ||| ||| ||||||||||| || | |||| ||||| | | Sbjct 28323 TGACCATTTATTGTAACAATTTTGCCAGGTGATTCATCATAACCCGCTAAAATACT--TC 28266 Query 26176 CAATCATGACCATTGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTA 26235 | ||| | ||| | |||||||| |||| ||||| || || |||| ||| | Sbjct 28265 CTGCCATAATCATAGTGGCACCAAAAGCTATTGCTTTAGCAATATCACCATTACATCTAA 28206 Query 26236 TGCCACCATCGGCAATCAAAGGTTTACGAGCTGC--TTTACTACATATGTTTAATGCCGC 26293 | |||||||| ||||| || |||||| | | ||| || | |||| | | ||| || Sbjct 28205 TACCACCATCTGCAATTAATGGTTTA-GTGGTGCTATTGGCAACATCT-TGTAAAGCATT 28148 Query 26294 TAACTGCCAACCACCAGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGG 26353 ||| || |||||||| |||||||| || ||||| | || ||||||||| || | || || Sbjct 28147 TAATTGTCAACCACCTGTACCAAATCCAGTTTTTAGTTTAGTAATACAAGCTTTTCCTGG 28088 Query 26354 ACCTATACCGACTTTGGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACC---TTC 26410 || | ||| | ||| | |||||||| || |||||||| ||| ||||| | || Sbjct 28087 GCCAACACCAAATTTAATTGCATCAGCGCCTCATTTTTCTAAATCTTTAACAGCGGTTTT 28028 Query 26411 TGGCGTACCAACATTACCAGCAATAACAAAACTATCAGGTATATG-------------GG 26457 || | | ||| ||||||||||||| |||| | | |||| || | Sbjct 28027 TGTCAT---AACGTTACCAGCAATAATAAAAGGTTTA-GTATTTGTTTTAGCAAAAGTAG 27972 Query 26458 TTTTAATATGTTTAATCATGTTTATCACTGAATCTGAGTGACCATGCGCAATATCTATTG 26517 |||| ||| ||||||||| | | || | || |||||||| |||||||| || | Sbjct 27971 TTTTTATAAATTTAATCATTTCTTCCATAGCATTACTATGACCATGTGCAATATCAATAG 27912 Query 26518 TAATATATTCGGGGATTA-ATTTTTCTTGAGCTAACTTTTCAATAAAATCAAATTCCGCT 26576 ||||| |||| || |||| ||| |||| ||| | ||||| || || ||| || Sbjct 27911 TAATAAATTCTGGAATTAGATTCAGTTTGA-TTAATTGTTCAAGTAACTCTTTATCCTCT 27853 Query 26577 TTCTTTACACCAACTGAAATAGATGCAAATAAGCCTGAATTTTGCATATGTTTTATAAAA 26636 || || ||||||| ||| || ||| |||| | | |||||| ||| ||||| Sbjct 27852 TTTTTAACACCAATGCTAATTGAAGCATATAACTTTTGTTCATGCATACTTTTAATAAA- 27794 Query 26637 GGTATTCTTGCTTCTTCATCAAAACGATGCATGATATAAAAGTAATCATTTTCAGCAAAC 26696 | | || || || |||||| ||||| | ||||||||||| ||||| ||| || Sbjct 27793 --TTTAATTTGATCGATATTAAAACGGTGCATTACATAAAAGTAATTATTTTTAGCCAAT 27736 Query 26697 CATTTCGCTAATTTCTCATTCATAACTGTTTGCATATTTGCAGGAACTACAGGTAGCTTG 26756 || | ||||| | || || || | ||||||||| |||| || | | Sbjct 27735 CAAATACATAATTCTTGGTTAATGACAGCACTCATATTTGCCGGAA-------TAATTGG 27683 Query 26757 AATTTT----TTCGGACCA---AATTGGATAGTTGTATCACATTCTGATCTACTCTCAAC 26809 |||||| | |||| | || | | | |||||||||||| || | ||| Sbjct 27682 AATTTTAAAAGTAAAACCATTTAGTTTAACACTGGTATCACATTCTTTTCGTGATTTAAC 27623 Query 26810 TATACATTTATTAGGTATTAATTGAATATCTTCATAGTCAAAT---ATTTTCA-TTTTTA 26865 ||| | |||||| | |||| | ||||||||| | |||||| | |||| |||||| Sbjct 27622 TATTCCTTTATTTGCAATTAGATTTATATCTTCAAAATCAAATTTCACATTCATTTTTTA 27563 Query 26866 TTTA 26869 |||| Sbjct 27562 TTTA 27559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146630159242576