Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq502 125 2e-23 seq1554 86.0 2e-11 >seq502 Length=146425 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | || |||||||| | ||||| || |||| || ||| | | ||| Sbjct 100166 TTTCCATTGTTGACGACAAAGCGTGTCTTTTGGAGAGGGGTTGTGGAGGAATTATTATGG 100107 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| | ||| || ||||| || ||||| || ||| ||| | ||||||||| Sbjct 100106 TTTATCAGAGGATCGACTAATGCTAAAGAACTGTCAAGTAAAGGTGTTCATATTTGGGAT 100047 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGAT 111494 | |||| | |||||||| |||||| |||| ||| || |||| || ||||||||| Sbjct 100046 GCAAATAGTTCACGTGAATTTCTAAATTCCTGTGGCTATGATGACAGGGAGGAAGGTGAT 99987 Query 111495 CTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 ||||| || ||||| |||||||||||||| | ||||||||| Sbjct 99986 CTCGGTCCTGTTTATGGATTTCAATGGCGAAATTTTGGTGCA 99945 >seq1554 Length=169980 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 364101 GACA-ATTCCCGC-ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 |||| ||||| || | ||| | | ||||| ||||| || || || | || ||||| Sbjct 3744 GACAGATTCCTGCTAGAGATGTT-TGGTTCGCCATACTGAGGTCTCAAGTAGAAACAGGC 3802 Query 364159 ACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGT 364218 || || |||||| ||||||||||| || || ||||| ||||| ||||| || | || Sbjct 3803 ACGCCGTATATGCTGTACAAAGATCATTGTAATCGCAAATCCAATCAGCAACATTTAGGA 3862 Query 364219 ACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACT 364278 |||||| || || || || ||||| |||||||| | || | ||| || || | Sbjct 3863 ACAATTAAGAGTAGTAATCTCTGTACAGAGATTATACAGTATTCAAGTCCTGAGGAAGTT 3922 Query 364279 GCCGTATGTAACCTTGCGTCGATCGC 364304 || ||||||||| | || || || || Sbjct 3923 GCAGTATGTAACTTGGCATCCATTGC 3948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303320602345232