Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1554 114 1e-20 seq188 107 2e-18 seq255 96.9 3e-15 seq771 91.5 1e-13 >seq1554 Length=169980 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||| || || ||||| || || | ||| || || | || |||| ||| |||| | | Sbjct 4674 GATTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAG 4615 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 | |||| || ||||||||||||| ||||| || |||| || || ||||| ||||| Sbjct 4614 GCTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCA 4555 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | ||| ||||| |||| || || || || | ||| || |||| ||||||||| Sbjct 4554 ATAGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCC 4495 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAAT 145278 |||| ||| || | || | |||||||||||||||||| || Sbjct 4494 ATAGATCAGTTGGTGTGACATTCCACATGTCGTACTGCAATAT 4452 >seq188 Length=1630868 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| |||||||||||||| Sbjct 124102 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 124043 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || ||||| || || |||| || | ||||||||| || ||| Sbjct 124042 AGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 123983 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||||| ||| | | || | || |||| | ||| | Sbjct 123982 ATTCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACT 123923 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || |||| ||||| || || |||||||| Sbjct 123922 TCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| |||||||||||||| Sbjct 122962 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 122903 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || ||||| || || |||| || | |||||| || || ||| Sbjct 122902 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 122843 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| ||| || || | | || | ||||| | | ||| | Sbjct 122842 ATTCCTTCCTTATC-TTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAAC 122784 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTA 131240 || | ||| | ||| || || || | ||| || |||||||||||||||| ||| Sbjct 122783 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATGATTTA 122730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| |||||||||||||| Sbjct 123190 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123131 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || ||||| || || |||| || | |||||| || || ||| Sbjct 123130 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 123071 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| ||| || || | | || | || || | || || | Sbjct 123070 ATTCCTTCCTTATC-TTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123012 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || ||||| |||||||| Sbjct 123011 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| |||||||||||||| Sbjct 123418 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123359 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || ||||| || || |||| || | |||||| || || ||| Sbjct 123358 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 123299 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| ||| || || | | || | || || | || || | Sbjct 123298 ATTCCTTCCTTATC-TTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123240 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || ||||| |||||||| Sbjct 123239 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| || ||||| |||||||||||||| Sbjct 123646 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 123587 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || ||||| || || |||| || | |||||| || || ||| Sbjct 123586 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 123527 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| ||| || || | | || | || || | || || | Sbjct 123526 ATTCCTTCCTTATC-TTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123468 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || ||||| |||||||| Sbjct 123467 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123420 >seq255 Length=939575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || ||||| || | || || |||||||| |||||||| ||| Sbjct 828057 GCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 827998 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | ||| || || || || || || |||| ||||| ||||| || ||||| Sbjct 827997 GAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 827938 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||||| ||||| | || | ||||| | | || | Sbjct 827937 AATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTAC 827878 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || |||||||| ||||| |||||||| Sbjct 827877 TTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | | || || ||||| | || || || || ||||| ||||||||| Sbjct 827601 GCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGA 827542 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || || ||||||||||| || |||| || ||||||||||| || || Sbjct 827541 AAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGG 827482 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||||| | || | ||||||| | || | Sbjct 827481 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAAC 827422 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||||| || || || || || || || |||||||||| Sbjct 827421 CTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCATGA 827372 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| || || || || | ||| || || || ||||| || ||||| Sbjct 828450 CCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAA 828391 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| ||||| ||||| ||| | |||| ||| || || || || ||| Sbjct 828390 AGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGG 828331 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || |||| | || | ||||| | | || | Sbjct 828330 ATGCCTTCTTTGTC-CTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAAC 828272 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || ||||| || ||||| |||||||| Sbjct 828271 TTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || ||||| || | || || |||||||| |||||||| ||| | || | | Sbjct 827816 CGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCG 827757 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || || || || || |||| ||||| ||||| || ||||| || |||||||| Sbjct 827756 TCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTA 827697 Query 131140 TCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| || |||| | | | || | |||||| | | |||| |||| || | Sbjct 827696 TCTTGGATCTTA-GCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGAT 827638 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 |||||| || |||| || || || |||||||||||| || Sbjct 827637 GGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCATGCCT 827598 >seq771 Length=410761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| |||| | |||||| || ||||||||||| ||||| ||| Sbjct 280076 TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCCGGAGGGATACCTTCCTTG 280135 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | || | |||||||| | ||| | || | ||| | Sbjct 280136 TCTTGGATCTTGGCCTTTACATTTTCAATAGTATCGGAAGCCTCAACCTCAAGGGTGATA 280195 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| || || ||||| |||||||| Sbjct 280196 GTCTTGCCCGTTAGGGTCTTCACGAAGATCTGCAT 280230 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| |||| | |||||| || ||||||||||| ||||| || Sbjct 282923 TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCCGGAGGGATACCTTCCTTA 282982 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | || | |||||||| | ||| | || | ||| | | Sbjct 282983 TCTTGGATCTTGGCCTTCACATTTTCTATAGTATCGGAAGCCTCAACCTCAAGGGTGATG 283042 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || ||||| || || || || |||||||| Sbjct 283043 GTCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 283077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001141283840