Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq254 235 4e-57 seq255 140 2e-28 seq561 131 1e-25 seq488 131 1e-25 seq378 131 1e-25 seq146 107 1e-18 seq188 98.7 7e-16 >seq254 Length=4355184 Score = 235 bits (260), Expect = 4e-57 Identities = 319/442 (72%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||||| | | || || ||||| ||||| || |||||||| ||||| || ||||| Sbjct 1384832 ATGGGGAGCGTCAATGTCAATCGCAATGTCAGCGATGCGTTCTATCGCTATAAGATGCCA 1384891 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 || ||| || |||||||| || || ||||| ||||| || || ||||| || |||||| Sbjct 1384892 CGGATCCAGGCTAAGGTCGAAGGCAAAGGAAATGGTATAAAGACTGTCATAGTTAACATG 1384951 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 || || ||||| || |||| | || || || || ||||| || ||||| || || Sbjct 1384952 GTCGACGTGGCTAAAGCTATCGGTAGACCGGCTACATATCCGACTAAGTATTTTGGATGT 1385011 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 || || || || ||||| ||||||||| |||||| ||| | || |||||||| || ||| Sbjct 1385012 GAGCTCGGTGCGCAGACACAGTTTGATTTCAAAAATGAGAGATTTATCGTTAATGGTTCG 1385071 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 || || | ||||||| || || | | || || || |||||||||| || || || Sbjct 1385072 CACGACGCAACCAAGCTTCAAGATCTCTTGGATGGATTCATTCGCAAGTACGTCCTTTGC 1385131 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCT 6521 | || ||||| || || ||||| || || | || | |||||| |||||||| Sbjct 1385132 CCGGCCTGCGACAATCCTGAGACTGAACTGTTGGTCAGTGCCAAGAAGGGAACCATCTCG 1385191 Query 6522 CAGGGCTGCAAAGCGTGCGGTTACCATGG-CAAGCTGGATTTATCACACAAACTCAACAC 6580 ||||| || ||||| ||||| | || || | || || || | ||||| || ||||| Sbjct 1385192 CAGGGTTGTAAAGCCTGCGGACATCACGGTCTAGTTGAATGCAAT-CACAAGCTGAACAC 1385250 Query 6581 CTTCATACTGAAGAATCCTCCA 6602 |||||| |||||||||||||| Sbjct 1385251 CTTCATTTTGAAGAATCCTCCA 1385272 >seq255 Length=939575 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||||||| | ||||| ||||| || || || |||||||| |||||||| Sbjct 828450 CCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAA 828391 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| || | ||||| ||||| || ||||| ||||||||||| | |||| Sbjct 828390 AGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGG 828331 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| |||||| || ||||| | | ||||| | ||||||| Sbjct 828330 ATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACT 828271 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || |||||||| || || | || |||||||| |||||||| Sbjct 828270 TCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 828224 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || |||||||| |||||||| || ||||| || || | | |||| || Sbjct 828038 ACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCG 827979 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||| || ||||| || | ||||| ||||| | || | |||||||||||| | Sbjct 827978 AGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGA 827919 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | | |||||| | ||| |||||||||||||| ||||| Sbjct 827918 ATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTAATGGTTTTC 827859 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| ||||||||||| |||||||| Sbjct 827858 CCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 >seq561 Length=33869 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16598 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 16657 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 16658 GGTCATATTTAGCCTTA 16674 >seq488 Length=40361 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37169 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 37110 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 37109 GGTCATATTTAGCCTTA 37093 >seq378 Length=24228 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8170 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 8111 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 8110 GGTCATATTTAGCCTTA 8094 >seq146 Length=31772 Score = 107 bits (118), Expect = 1e-18 Identities = 64/67 (96%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22196 CTCTCTCTTCGAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 22137 Query 20007 GGTAATA 20013 ||| ||| Sbjct 22136 GGTCATA 22130 >seq188 Length=1630868 Score = 98.7 bits (108), Expect = 7e-16 Identities = 166/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||| |||||| ||| ||||| ||||| ||||||| Sbjct 122966 CATT-CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAAT 122908 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | |||| | || || | ||| ||||| ||||| || | | || ||||| | Sbjct 122907 CAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTG 122848 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || |||||| || ||||| | | ||||| | Sbjct 122847 GTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCT 122788 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTAC 38324 |||| || | || || || || || ||||| || |||||||| ||||||||| ||||| Sbjct 122787 CAACCTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATGATTTAC 122729 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||| |||||| ||| ||||| ||||| ||||||| Sbjct 124106 CATT-CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAAT 124048 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | || |||| || | ||| ||||| ||||| || | | || || || | Sbjct 124047 CAGAAAGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTG 123988 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||| |||||| ||||||||| | | || || | Sbjct 123987 GTGGGATTCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCT 123928 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || ||||| || || || ||||| || || |||||||| Sbjct 123927 CAACTTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||| |||||| ||| ||||| ||||| ||||||| Sbjct 123194 CATT-CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAAT 123136 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | |||| | || || | ||| ||||| ||||| || | | || ||||| | Sbjct 123135 CAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTG 123076 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || |||||| || ||||| | | || ||| || Sbjct 123075 GTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTT 123016 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || || || || || | || || |||||||||||||| Sbjct 123015 CAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||| |||||| ||| ||||| ||||| ||||||| Sbjct 123422 CATT-CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAAT 123364 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | |||| | || || | ||| ||||| ||||| || | | || ||||| | Sbjct 123363 CAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTG 123304 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || |||||| || ||||| | | || ||| || Sbjct 123303 GTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTT 123244 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || || || || || | || || |||||||||||||| Sbjct 123243 CAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||| |||||| ||| ||||| ||||| ||||||| Sbjct 123650 CATT-CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAAT 123592 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | |||| | || || | ||| ||||| ||||| || | | || ||||| | Sbjct 123591 CAGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTG 123532 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || |||||| || ||||| | | || ||| || Sbjct 123531 GTGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTT 123472 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || || || || || | || || |||||||||||||| Sbjct 123471 CAACTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939133634056