Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq211 168 8e-37 seq1554 156 5e-33 seq648 95.1 2e-14 seq295 95.1 2e-14 >seq211 Length=255845 Score = 168 bits (186), Expect = 8e-37 Identities = 304/444 (68%), Gaps = 3/444 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||||||||||| || || ||||| ||||| | ||||| || | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || | || || ||| ||||| ||||||||||| || || || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGG 32859 |||| | | ||| || || || ||||||| ||||| ||| ||||||| || Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 32919 | || || || || || | |||| || ||||| |||||| | | | || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 32920 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 || | | |||| | || | || ||||||||| || || | |||||||| | Sbjct 251984 CATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTG 251925 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 | |||||||| || |||||||| | || || || | || |||||| || || |||| Sbjct 251924 CTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTT 251865 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 || ||| ||| ||||| || || || || ||||||||||||||||||||||| || Sbjct 251864 CTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATA 251805 Query 33100 TAAAATATTTTTCGTCTGGTGTTA 33123 |||||| |||||| ||||| Sbjct 251804 TAAAATGACGTTCGTCATCTGTTA 251781 >seq1554 Length=169980 Score = 156 bits (172), Expect = 5e-33 Identities = 182/244 (75%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 || || ||||| |||||||| | |||||||| || | | | || | | ||| |||||| Sbjct 4729 TTTTTCATCTCGTCATTCCAAAGGTTTCTCTCTGTCAGATCCCTCAATAAATGTGGATTA 4670 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || |||||||||||||||||||| || | || ||| |||||||| || || || || Sbjct 4669 ACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGCTCA 4610 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308 | || || ||||| ||||||||||| ||||| || || |||||||| || |||| | | Sbjct 4609 ATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAATAGT 4550 Query 62309 AAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAA 62366 ||| ||| | | ||| ||||| || ||||| ||||| || | | |||||| ||| | Sbjct 4549 AAAGAATTCCGCACACC--ATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCATA 4492 Query 62367 GATC 62370 |||| Sbjct 4491 GATC 4488 Score = 132 bits (146), Expect = 6e-26 Identities = 193/270 (71%), Gaps = 12/270 (4%) Strand=Plus/Minus Query 62590 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 62649 |||||| |||||||| || | | |||| || ||| || ||| |||| ||||||||||| Sbjct 4111 AATACCCATAGGTCTGTGGCGCATATTTGAATTTTTAGTTTCAGGAAGTGGATAATAATT 4052 Query 62650 AATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTT 62706 |||| || | ||| |||||||| | | || ||| |||| ||| |||||||||| Sbjct 4051 CCTATCAATGACTTTGTTGAGATTACGAGTCACTATT--TTTG-TAACAGCCTTCAGTTT 3995 Query 62707 GAGAAAATCAAATCGC------CCATCTATTACAAACATGTTCAATGCAACAGATGCCAG 62760 ||||||| || | || |||||||||| || | |||| ||||||| Sbjct 3994 TTCAAAATCATATGTCTTTTTTGCAGTATTTACAAACATATTGACAGCAATGGATGCCAA 3935 Query 62761 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62820 ||||| || || || || | || | | ||| ||||| ||||| || || |||||||| Sbjct 3934 GTTACATACTGCAACTTCCTCAGGACTTGAATACTGTATAATCTCTGTACAGAGATTACT 3875 Query 62821 ACACTTGATGGTTCCTAAATTTTGTTGATT 62850 || ||| || |||||||||| ||| ||||| Sbjct 3874 ACTCTTAATTGTTCCTAAATGTTGCTGATT 3845 Score = 116 bits (128), Expect = 5e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||||||| || | ||| | |||| ||| | || || || ||||||||||| Sbjct 3043 CTGGACATTTGCTGCCTCAAAGTGCACGCAGAAAAAAGCGTTGGTGACGCGTGAGTAAAG 2984 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || ||||| | || ||||| || ||||| || |||| ||| || ||| || Sbjct 2983 TATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTATCTACATCATTTTCATGGATG 2924 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | || || || | ||||||||| || ||||| ||||| | | |||| | ||||||| Sbjct 2923 GCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCGGCAACCTTGCCATCTATTTTC 2864 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | ||| ||| | |||| || |||||||||||||| || ||||| |||||| || || Sbjct 2863 AGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAATTGTAGCCAAAGTCACGATCA 2804 Query 63686 TAAA 63689 |||| Sbjct 2803 TAAA 2800 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 |||||| || |||||||| |||| | || |||||||||| | || ||||| || Sbjct 3637 TTCGAATTCTTCTCCCCAGACATCAGCAAGACCAGGACATTGGTGAGGGCACATTAAACT 3578 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || ||||| | | ||||||||||| ||||||||||||||||| || ||| Sbjct 3577 CCAGGTGCCACCATCCATAGCACGTTTCATAAATAGATCAGGAATCCAAAGGGCGTAAAA 3518 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63145 || ||||| | || | |||||| |||||| || Sbjct 3517 AAGTTCTCTAGCTCGAGTTTCCTCATTTCCTATA 3484 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||| ||||||||||| | ||| |||| ||||||| |||||| ||||||| |||||| | Sbjct 3404 TATTTTTTTTAAGATCCAAGAATTCCATTATATCAGCATGCCATGGTTCCACGTATATAG 3345 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | ||||||| | |||||||| ||||| || | |||| || ||||| ||| Sbjct 3344 CAAATGCTCCAGGTCTCTTGTTTCCACCCTGGTCAACATATCGTGCCACATTATTGAAAA 3285 Query 63264 CTCTCAACATTGGAA 63278 | | | ||||||| Sbjct 3284 GTTTGAGTATTGGAA 3270 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 |||| ||||| | | ||| ||||||||||| ||||| ||||| || ||||| || ||| Sbjct 4333 TATGTGCCTTCTTCTTTAGCCAGTTCACAACTAGCCTCCAATGCTCCATAATATATAGTT 4274 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 ||||| || | |||| || | ||| |||||| || ||||| |||||| | | | Sbjct 4273 TCGAAAATTTGAATATTAAGCTTTTGAGCTTCCTCACTTTCAAACGGATAACGCATCAAA 4214 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 | ||| || || || || || || | || ||||| Sbjct 4213 AGAAATGCATCGGCCAAGCCCTGTATTCCTATACC 4179 >seq648 Length=307961 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63544 || || | || |||| |||| || || || | || |||||| |||||||| || Sbjct 4059 GTTGGTGGAGAGTGAATAAAATATCGTTGGGACATTAAATTGTAAGTCTCAATGACTTTT 4118 Query 63545 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || || || |||||| | || || | ||||||||| |||||||||||||| Sbjct 4119 TCAATGTCATCTTCGTGAATTGAAATAGCAACTCTCATTAACATATGCTGAGGTCTTTCG 4178 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 || | |||| |||||| || | || || |||||||| |||||||| ||||| || Sbjct 4179 ACAACCTTGCCGTTTATCTTTAGTAAAAAGCTTTTTTCCAGTGTTTTAAAGCCAAAGTAA 4238 Query 63665 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || |||||| || || || | || || || || ||| Sbjct 4239 TTATAATCAAAGTCGCGATCATATACTATTACAGAATTTAGT 4280 >seq295 Length=3859974 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63571 ||||| | |||||| || ||||||||| || || ||| | || ||| ||| | | Sbjct 1466980 TCAGACATTAGATTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATA 1467039 Query 63572 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63631 || || | ||||| ||| ||||| ||||||||||||| ||| || ||||||| | Sbjct 1467040 GCAACTCTCATTATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGA 1467099 Query 63632 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63691 || || ||||| | |||||| ||||| ||||| || |||||| ||| | || | Sbjct 1467100 TAATTTTCTTCCAGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCGCGTCCATATACT 1467159 Query 63692 ATAACCGAGTTGAGTTTATC 63711 || || || || ||| |||| Sbjct 1467160 ATTACTGAATTTAGTATATC 1467179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616349289600