Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq188 143 2e-29 seq255 116 3e-21 >seq188 Length=1630868 Score = 143 bits (158), Expect = 2e-29 Identities = 176/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || || || |||||| | ||||| | ||||| ||| |||| Sbjct 124331 AATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTC 124390 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || || ||||| | |||| ||| |||||||| || || ||||| |||| Sbjct 124391 TGACACGATAGAAAATGTGAAGGCTAAAATTCAA-GACAAAGAGGGAATCCCACCAGACC 124449 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | |||||||| || || ||| | ||||||| || ||| | || |||| Sbjct 124450 AGCAGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACA 124509 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATTA 25234 |||| ||||||||||| || || || ||||| || | || || || ||||| | ||| Sbjct 124510 ATATCCAAAAAGAATCAACTCTTCACTTAGTTCTTCGACTTAGGGGTGGAAAATGTTA 124567 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || || || || ||| | ||||| | ||||| ||| | || Sbjct 123875 AATGCAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATC 123934 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || ||||| | |||| ||| ||||||||||| || ||||| |||| Sbjct 123935 CGACACGATAGAAAATGTGAAGGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGACC 123993 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || ||| | ||||| | |||||| | ||||||| Sbjct 123994 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACA 124053 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || |||||||| || ||| | || || Sbjct 124054 ACATTCAGAAGGAATCCACCCTTCATCTGGTACT 124087 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || ||| | ||| Sbjct 122736 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGGCATCT 122795 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| ||| || || ||||| || ||||| || Sbjct 122796 GATACGATTGA--AAATGTAAAAGCCAAAATTCA-AGATAAGGAAGGAATCCCACCAGAT 122852 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || ||| | ||||||| || ||| | |||||| Sbjct 122853 CAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTAC 122912 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || |||||||| || ||| | || || Sbjct 122913 AACATTCAGAAGGAATCCACCCTTCATCTGGTACT 122947 Score = 105 bits (116), Expect = 6e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || |||||| | || || || ||||||| | ||||| || | || Sbjct 124103 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 124162 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| |||| ||| || || ||||| || ||||| || Sbjct 124163 AGACACGATTGAA--AATGTAAAAGCCAAAATTCAA-GATAAGGAAGGAATCCCACCAGA 124219 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || ||||| || ||||| | || |||| || || | || || Sbjct 124220 TCAGCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTA 124279 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| |||||||| || || ||||| || || ||||| | || |||| Sbjct 124280 CAATATTCAGAAAGAATCTACTCTTCATTTGGTACTCAGGCTTCGTGGTGGAA 124332 >seq255 Length=939575 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| | ||||| |||| || || | || Sbjct 827374 ATGCAGATCTTTGTGAAGACCCTTACAGGAAAAACAATCACCCTCGAGGTTGAAGCTTCC 827433 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| ||||||||||| |||||||||||||| Sbjct 827434 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCTGACCAG 827493 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | ||||||| | || | |||||||||| Sbjct 827494 CAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAAT 827553 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||| ||||| ||||| || | || || | ||||| Sbjct 827554 ATTCAGAAAGAATCAACGCTTCATTTGGTTTTGAGACTTCGCGGAGG 827600 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || ||| | ||||| | ||||| || | || Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| ||||||||||| || || ||||| Sbjct 828284 GATACGATTGAAAATGTCA---AAGCTAAAATTCAG-GACAAAGAAGGCATCCCCCCTGA 828339 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | ||||| ||||||||||| | || || | | || | ||||| Sbjct 828340 TCAACAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTA 828399 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || || || || || || Sbjct 828400 TAATATTCAGAAAGAATCAACCCTTCACTTGGTACT 828435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| |||| || ||| |||| ||| | ||||| || | || Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| | || |||| ||| ||||||||||| ||||| || || Sbjct 827890 GATACGATTGAAAATGTCA---AGGCCAAAATTCAA-GACAAAGAAGGCATTCCTCCAGA 827945 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | || ||||| || |||||| | ||||| | | || | ||| || Sbjct 827946 TCAGCAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTA 828005 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| ||||| || || || ||||| || Sbjct 828006 CAACATCCAAAAGGAATCTACTCTTCACTTAGTTCT 828041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317564378440