Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq211 251 8e-62 seq889 107 2e-18 seq200 107 2e-18 seq138 100 3e-16 >seq211 Length=255845 Score = 251 bits (278), Expect = 8e-62 Identities = 329/453 (73%), Gaps = 2/453 (0%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| || || || || ||||||||||| | || || | | || |||||||| Sbjct 252222 TCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCTTC 252163 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 |||||||| || | ||| ||||||||| || || || ||||| || ||||| || || Sbjct 252162 AGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACGCA 252103 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA-TCCATTTTAAAGCCCAATCGGC 93294 | | |||||| |||||| |||| | | | ||| | |||| ||||| ||||||| ||| Sbjct 252102 ATCACACGTTCTGCAAAAGTTGCTGTGTCA-TGCGAAATCCAATTTAAGGCCCAATTGGC 252044 Query 93295 TTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGA 93354 |||||| || || || || | ||||| || || || || |||| | ||| || | Sbjct 252043 TTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGGC 251984 Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 || | ||| |||| | || | || ||||||||||| || || ||||| || ||||| Sbjct 251983 ATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATTGC 251924 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||| || || ||||| || | |||||||| | || ||||||||| || | || Sbjct 251923 TATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGTTC 251864 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| ||||| |||||||| |||||||| |||||||||||||| ||||||| ||| ||| Sbjct 251863 TACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGATAT 251804 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 |||||| || |||||| | | ||| |||| Sbjct 251803 AAAATGACGTTCGTCATCTGTTAACTTTACCCA 251771 >seq889 Length=395420 Score = 107 bits (118), Expect = 2e-18 Identities = 73/81 (90%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| |||||||||| Sbjct 173147 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATATGGGAGCGTGG 173206 Query 126327 GTTCGAACCCCACACCTGACA 126347 |||||||||||||||||| || Sbjct 173207 GTTCGAACCCCACACCTGGCA 173227 >seq200 Length=2828343 Score = 107 bits (118), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| Sbjct 45525 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTATGGGAGCGTGG 45466 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||| | || || Sbjct 45465 GTTCGAACCCCACACTTAGCAAACTTTTTTT 45435 >seq138 Length=1211641 Score = 100 bits (110), Expect = 3e-16 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126271 GTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGGGT 126328 |||||||||| |||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct 328359 GTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAGATGGGAGCGTGGGT 328418 Query 126329 TCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||| | |||| | || || Sbjct 328419 TCGAACCCCACACTTAGCAAAATCTTTTT 328447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847045538240