Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq188 111 1e-19 seq255 89.7 4e-13 >seq188 Length=1630868 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| ||||||| ||||| |||||||| || ||| | ||| || || | Sbjct 123875 AATGCAGATCTTTGTTAAAACGTTAACTGGCAAAACGATCACCCTTGAAGTTGAGGCATC 123934 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | || | ||| |||||| || ||||| || | || | |||| Sbjct 123935 CGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCA 123994 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || ||||| ||||| ||| | | |||||||| Sbjct 123995 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGCCGCACTCTTTCTGATTACAA 124054 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || |||||| ||||| | ||| | || || ||| Sbjct 124055 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 124103 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || | || || || ||||| ||| | ||| |||||| | Sbjct 122963 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123022 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | || | || |||||| ||||| || || | || | | || Sbjct 123023 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123082 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || ||||| |||||| | ||| | | |||||||| Sbjct 123083 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123142 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || |||||| ||||| | ||| | || || ||| Sbjct 123143 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 123191 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || | || || || ||||| ||| | ||| |||||| | Sbjct 123191 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123250 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | || | || |||||| ||||| || || | || | | || Sbjct 123251 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123310 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || ||||| |||||| | ||| | | |||||||| Sbjct 123311 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123370 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || |||||| ||||| | ||| | || || ||| Sbjct 123371 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 123419 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || | || || || ||||| ||| | ||| |||||| | Sbjct 123419 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123478 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | || | || |||||| ||||| || || | || | | || Sbjct 123479 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123538 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || ||||| |||||| | ||| | | |||||||| Sbjct 123539 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCTGATTACAA 123598 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || |||||| ||||| | ||| | || || ||| Sbjct 123599 CATTCAGAAGGAATCCACCCTTCATCTGGTACTCCGTCTCCGTGGTGGA 123647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || | || || || ||||| ||| | ||| |||||| | Sbjct 124103 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 124162 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | || | || |||||| ||||| || || | || | | || Sbjct 124163 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 124222 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| ||||| || || ||| ||| | | || ||||| Sbjct 124223 GCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTACAA 124282 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||||||| ||||||||||||||| ||||| Sbjct 124283 TATTCAGAAAGAATCTACTCTTCATTTGGTA 124313 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| ||||| | || || | || || || ||||| ||| | ||| |||||| | Sbjct 123647 AATGCAGATATTCGTCAAGACTCTTACAGGAAAGACCATCACCCTTGAAGTTGAAGCCTC 123706 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | || | || |||||| ||||| || || | || | | || Sbjct 123707 AGACACGATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCACCAGATCA 123766 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| ||||| || || ||| ||| | | || || || Sbjct 123767 GCAGAGGTTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGAACATTATCTGACTATAA 123826 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||||||| ||||||||||||||| ||||| Sbjct 123827 TATTCAGAAAGAATCTACTCTTCATTTGGTA 123857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| ||||| || || | || | | || ||||| | ||||||||||| || Sbjct 122820 AAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGAAAG 122879 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| |||||| | ||| | | |||||||| |||||||||||||| || |||||| Sbjct 122880 CAACTTGAAGATGGACGTACTCTTTCTGATTACAACATTCAGAAGGAATCCACCCTTCAT 122939 Query 22038 ATGGTATTACGTTTACGAGGAGGA 22061 ||||| | ||| | || || ||| Sbjct 122940 CTGGTACTCCGTCTCCGTGGTGGA 122963 >seq255 Length=939575 Score = 89.7 bits (98), Expect = 4e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| || | |||||||||||||| || || |||||| || ||| | |||||| Sbjct 827489 ACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATT 827548 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||| ||||| || |||||| |||| || Sbjct 827549 ACAATATTCAGAAAGAATCAACGCTTCATTTGGTTTT 827585 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || ||||| || |||||||| || | ||| ||||| || Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| || || |||||||| || | ||| | | || Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| |||||||| ||||| | || | |||| ||||| Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 827781 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || || ||||||||||||||||| Sbjct 827782 ATCCAAAAGGAATCTACTCTTCA 827804 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| | || || ||||||||||| | ||| ||||| || Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| |||||| || ||||| || | ||| | | || Sbjct 827890 GATACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAG 827949 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| |||||||| ||||| | || | |||| ||||| Sbjct 827950 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 828009 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || || ||||||||||||||||| Sbjct 828010 ATCCAAAAGGAATCTACTCTTCA 828032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358116175459504