Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq737 107 2e-18 seq378 107 2e-18 >seq737 Length=19741 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 8059 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 8118 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 8119 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 8158 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 8059 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 8118 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 8119 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 8158 >seq378 Length=24228 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 3112 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 3053 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 3052 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3013 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || ||||||||||| Sbjct 3112 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACGATCTAAGGAA 3053 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 3052 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3013 Score = 96.9 bits (106), Expect = 3e-15 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 115535 TATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAACCAA 115590 |||| |||||||||||||||| ||||||||||||| || | || |||||||||||||| Sbjct 2237 TATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTGTGGGTACGATCTAAGGAACCAT 2178 Query 115591 AACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||||||| || || |||||||| ||| || ||||| Sbjct 2177 AACTGATTTAATGTGCCATTCGCGGTTTCACCTTAA 2142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 81/96 (84%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 114338 TATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAACCAA 114393 |||| |||||||||||||||| ||||||||||||| || | || |||||||||||||| Sbjct 2237 TATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTGTGGGTACGATCTAAGGAACCAT 2178 Query 114394 AACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||||||| || || |||||||| ||| || ||||| Sbjct 2177 AACTGATTTAATGTGCCATTCGCGGTTTCACCTTAA 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052837744752