Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq188 156 1e-32 seq255 136 9e-27 seq771 134 3e-26 >seq188 Length=1630868 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||||| ||||||| ||| ||| || || || || || || | Sbjct 123191 TCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGA 123132 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | ||| ||||| || ||||||| | ||| ||| ||| Sbjct 123131 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123072 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | || | ||| || Sbjct 123071 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123012 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || || |||||||||||||||||||||||| Sbjct 123011 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||||| ||||||| ||| ||| || || || || || || | Sbjct 123419 TCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGA 123360 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | ||| ||||| || ||||||| | ||| ||| ||| Sbjct 123359 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123300 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | || | ||| || Sbjct 123299 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123240 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || || |||||||||||||||||||||||| Sbjct 123239 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||||| ||||||| ||| ||| || || || || || || | Sbjct 123647 TCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGA 123588 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | ||| ||||| || ||||||| | ||| ||| ||| Sbjct 123587 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123528 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | || | ||| || Sbjct 123527 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123468 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || || |||||||||||||||||||||||| Sbjct 123467 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123419 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || || ||||| | ||||| || |||||| || ||||||||||| | Sbjct 123875 TCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGA 123816 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || | |||||||| || ||||||| | ||| ||| ||| Sbjct 123815 TAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 123756 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | || | ||| || Sbjct 123755 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 123696 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || || |||||||||||||||||||||||| Sbjct 123695 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123647 Score = 147 bits (162), Expect = 5e-30 Identities = 178/241 (74%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||||| ||||||| ||| ||| || || || || || || | Sbjct 122963 TCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGA 122904 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | ||| ||||| || ||||||| | ||| ||| ||| Sbjct 122903 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 122844 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | ||| | || || Sbjct 122843 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAAC 122784 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTA 288485 || || ||||| |||||||| |||| |||||| ||||| |||||||| || ||| | || Sbjct 122783 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATGAT-TTACTGTA 122725 Query 288486 A 288486 | Sbjct 122724 A 122724 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || || ||||| | ||||| || |||||| || ||||| ||||| | Sbjct 124331 TCCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGA 124272 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || | |||||||| || ||||||| | ||| ||| ||| Sbjct 124271 TAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 124212 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | || | ||| || Sbjct 124211 GATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAAC 124152 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || || |||||||||||||||||||||||| Sbjct 124151 TTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCATT 124103 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||||| ||||||| ||| ||| || || || || || || | Sbjct 124103 TCCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGA 124044 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| | ||| ||||| || ||||||| | ||| || ||| Sbjct 124043 AAGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 123984 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||| || || ||||| || ||||| |||||||| | ||| | || || Sbjct 123983 GATTCCTTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAAC 123924 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || |||||||| || || || | || || || || ||||||||| Sbjct 123923 TTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCATT 123875 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | |||| ||| || | |||| || ||||||||||||||| ||||| | Sbjct 124559 TCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGA 124500 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || ||||| ||||| | ||| ||||| || || |||| | ||| || ||| Sbjct 124499 GAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 124440 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| ||||| || || ||||| || ||||| |||||||| | || || || || Sbjct 124439 GATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAAC 124380 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || |||||||| || || || | || || || || ||||||||| Sbjct 124379 TTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 >seq255 Length=939575 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | |||| || ||| |||||||| || ||||||| | Sbjct 827828 CCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAG 827769 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||| | |||||| || || ||||||| ||| || ||| ||||| Sbjct 827768 AGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGA---TCTGGA 827712 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||| ||||| || ||||| || ||||| |||| ||| | ||| Sbjct 827711 GGAATGCCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCG 827652 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| || || || || | ||||| || || |||||||| Sbjct 827651 ACTTCGAGAGTGATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || | ||||| ||| ||| ||||||||||| ||||| | Sbjct 828222 CCACCACGAAGTCGTAAAACTAAATGAAGCGTTGATTCCTTTTGGATATTGTAGTCTGAT 828163 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||||||||| ||||| | |||||| || |||||||||| ||| || ||| Sbjct 828162 AGCGTGCGTCCATCTTCAAGTTGTTTACCAGCGAAGATCAAACGTTGCTGA 828112 >seq771 Length=410761 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || |||||||||||||||| | || || || ||||| | || || || |||||||| Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||||||| ||||| ||||| ||||| ||||| || || ||||| |||||| Sbjct 282950 AGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCT 283009 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 |||| |||| | || || || || ||||| ||||| || || || ||||| || || Sbjct 283010 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAG 283069 Query 288466 ATCTGCATT 288474 ||||||||| Sbjct 283070 ATCTGCATT 283078 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| |||||||||| | || || || ||||| | || || || ||||||| Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | |||||||||||| ||||| ||||| || || ||||| || || || || |||| Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTT 280160 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| |||| | || || || || ||||| ||||| || || || ||||| |||| Sbjct 280161 CAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGA 280220 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 280221 AGATCTGCATTGTG 280234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624534099728