Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq188 125 7e-24 seq1554 118 1e-21 seq255 98.7 1e-15 >seq188 Length=1630868 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || |||||||||||||| | | || || | ||| Sbjct 122947 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 122888 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | || |||||| || || || |||||||| || ||| Sbjct 122887 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 122828 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | |||||| || || || || | || | |||| Sbjct 122827 TGAATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTC 122768 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || |||||||| ||||| Sbjct 122767 TTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || |||||||||||||| | | ||||| ||||| Sbjct 124087 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCT 124028 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | || ||||||||| || || ||||||||||| ||| Sbjct 124027 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCT 123968 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | || || || || ||||| | || | || Sbjct 123967 TGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTT 123908 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || || ||||| || || || |||||| Sbjct 123907 TTGCCAGTTAACGTTTTAACAAAGATCTGCATT 123875 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 || ||| |||| |||| || ||||||||||| || ||||| |||| || || || | Sbjct 124547 TCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAGAGAGTACGTCC 124488 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||||| ||||| || ||| |||| | || ||||||||| || || ||||| ||||| Sbjct 124487 ATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTCTTT 124428 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| ||||| ||| ||| || | || ||| || || ||||| | || | Sbjct 124427 GTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACTTCAAGGGTGAT 124368 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || || || ||||| || || || |||||| Sbjct 124367 CGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || |||||||||||||| | | || || | ||| Sbjct 123175 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 123116 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | || |||||| || || || |||||||| || ||| Sbjct 123115 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123056 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | || || ||| || ||||| | || | |||| Sbjct 123055 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 122996 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || ||||| || |||||| Sbjct 122995 TTTCCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || |||||||||||||| | | || || | ||| Sbjct 123403 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 123344 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | || |||||| || || || |||||||| || ||| Sbjct 123343 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123284 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | || || ||| || ||||| | || | |||| Sbjct 123283 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 123224 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || ||||| || |||||| Sbjct 123223 TTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || |||||||||||||| | | || || | ||| Sbjct 123631 AGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 123572 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| ||||| || ||| | || | || |||||| || || || |||||||| || ||| Sbjct 123571 TCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCT 123512 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | || || ||| || ||||| | || | |||| Sbjct 123511 TGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTC 123452 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || ||||| || |||||| Sbjct 123451 TTTCCTGTAAGAGTCTTGACGAATATCTGCATT 123419 >seq1554 Length=169980 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 154020 TTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGC 154079 |||| |||||||| || || | ||| ||||| | ||| |||| ||| || ||| | ||| Sbjct 4672 TTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGC 4613 Query 154080 TCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACC 154139 || | |||||||| ||||| || ||||| || || | || || ||||| ||||| Sbjct 4612 TCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAAT 4553 Query 154140 AACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCAC 154199 | ||||| || |||| ||| ||||||||||| ||| | ||||||||| ||| Sbjct 4552 AGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCAT 4493 Query 154200 AAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAA 154237 | | || ||| || |||||||||||||| ||||| Sbjct 4492 AGATCAGTTGGTGTGACATTCCACATGTCGTACTGCAA 4455 >seq255 Length=939575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | ||| | || | ||||| ||| |||||||| ||||| |||||||| | Sbjct 827600 CCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAA 827541 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| ||||||||||| ||| | || | ||||||||||| || ||| Sbjct 827540 AGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGA 827481 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC 64383 || |||||||| || || || || ||| ||| || | |||||| Sbjct 827480 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATC 827434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632458773440