Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1554 118 1e-21 seq255 100 3e-16 seq188 89.7 5e-13 >seq1554 Length=169980 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 153030 TTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGT 153089 || || |||||||| || || | ||| || || |||| || | ||| || ||| |||| Sbjct 4672 TTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGTGTAAGGC 4613 Query 153090 TCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACC 153149 |||| |||||||||||||| | ||||| || || | || |||||||| ||||| Sbjct 4612 TCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGGCGCCAAT 4553 Query 153150 AACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCAC 153209 | ||||||||||||| || || | ||| | || |||| ||| ||||||||| Sbjct 4552 AGTAAAGAATTCCGCACACCATGTTTTGCAATTTTTTCTTTCAGCGCTGCCCAATCCCAT 4493 Query 153210 AGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247 || | | ||||| | ||||||||||||||||| || Sbjct 4492 AGATCAGTTGGTGTGACATTCCACATGTCGTACTGCAA 4455 >seq255 Length=939575 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | || | |||||| || | | || |||||||| |||||||||||| Sbjct 828057 GCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 827998 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||| |||||||||||||| | | |||| | ||| || || || ||||| Sbjct 827997 GAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 827938 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||| | || | | ||| | || || | | || | Sbjct 827937 AATGCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTA 827879 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| |||||||||||||| || || |||||||| Sbjct 827878 CTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 |||||| || | | || |||||||| |||||||||||| | || | ||| || Sbjct 827811 AACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTC 827752 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 |||||||||||| | | |||| | ||| || || || ||||| || |||||||| || Sbjct 827751 GAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTATCTTG 827692 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || ||| | | ||| | || || | | || || |||| || | ||||| Sbjct 827691 GATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTGATGGTTTT 827632 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || | || || ||||||||||||||| || Sbjct 827631 TCCTGTTAAGGTCTTAACAAAAATCTGCATGCCT 827598 >seq188 Length=1630868 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | || ||||| ||||||||||| || Sbjct 124102 CCACCACGGAGACGGAGTACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAA 124043 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || ||||| || || | | |||| | | ||| ||||| || || Sbjct 124042 AGAGTGCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 123983 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | ||| | ||||||| | ||| || Sbjct 123982 ATTCCTTCTTTGTC-TTGAATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAAC 123924 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| ||||| | ||||| ||||| |||||||| Sbjct 123923 TTCAAGGGTGATCGTTTTGCCAGTTAACGTTTTAACAAAGATCTGCAT 123876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 |||||| || | |||| || ||||| || |||||||| | |||||| || || Sbjct 124541 AACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAGAGAGTACGTCCATCTTC 124482 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||| || || | | | || | | ||| ||||| || || || || |||||||| | Sbjct 124481 AAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCT-T 124423 Query 138525 GATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| | || | | ||| | ||||| | || ||| || || | || | ||||| Sbjct 124422 GAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACTTCAAGGGTGATCGTTT 124363 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| | ||||| ||||| |||||||| Sbjct 124362 TACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250142318720