Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq255 154 1e-32 seq188 104 2e-17 >seq255 Length=939575 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || || | || | |||||| ||||| ||||| || ||||| |||||||| ||| Sbjct 828058 TGCCTCCACGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 827999 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || ||||||| | |||||| ||||| | |||||||| || || || | Sbjct 827998 AGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 827939 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| ||||||| || ||| |||| || ||||| | ||||| Sbjct 827938 GAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTA 827879 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| ||||||||||| || ||||||||||| || || || |||||| Sbjct 827878 CTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCATA 827829 >seq188 Length=1630868 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 122939 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 122880 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| || || ||| ||||||||||| || |||||| Sbjct 122879 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 122820 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||||| |||| || ||||| || || || | ||| ||||| || || || Sbjct 122819 GGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTCCCAGT 122760 Query 15153 CAGAGTTTTTACAAAAATTTGCAT-ATTT 15180 || ||| || || ||||| ||||| |||| Sbjct 122759 CAAAGTCTTCACGAAAATCTGCATGATTT 122731 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 123167 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 123108 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| || || ||| ||||||||||| || |||||| Sbjct 123107 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123048 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||||| |||| || || || ||| || || | ||| ||||| || ||||| Sbjct 123047 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 122988 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| Sbjct 122987 AAGAGTCTTGACGAATATCTGCAT 122964 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 123395 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 123336 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| || || ||| ||||||||||| || |||||| Sbjct 123335 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123276 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||||| |||| || || || ||| || || | ||| ||||| || ||||| Sbjct 123275 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 123216 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| Sbjct 123215 AAGAGTCTTGACGAATATCTGCAT 123192 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || ||||||||||| ||| | | | ||||| | ||| Sbjct 123623 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCAAGTTG 123564 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| || || ||| ||||||||||| || |||||| Sbjct 123563 CTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 123504 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||||||| |||| || || || ||| || || | ||| ||||| || ||||| Sbjct 123503 GGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGT 123444 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| Sbjct 123443 AAGAGTCTTGACGAATATCTGCAT 123420 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || |||||||| ||||| ||||| || || ||||| || | Sbjct 124330 CCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCA--G 124273 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || || | ||||| ||||| | ||||| | ||| || || || Sbjct 124272 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 124213 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || ||||||| ||||||| |||| || || || ||| | Sbjct 124212 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 124153 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 124152 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || ||||||||||| ||| | | ||||||| | ||| Sbjct 124079 ATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCAAGTTG 124020 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| ||||| ||| |||||||| ||||| |||||| Sbjct 124019 CTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTT 123960 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||||||| || ||| || || || | ||| || ||||| || || Sbjct 123959 AGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTGCCAGT 123900 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| ||||| || ||||| Sbjct 123899 TAACGTTTTAACAAAGATCTGCAT 123876 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || |||||||| ||||| ||||| || || || || || | Sbjct 123874 CCACCACGAAGCCTGAGTACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCA--G 123817 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | || || | ||||| ||||| | ||||| | ||| || || || Sbjct 123816 ATAATGTTCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTG 123757 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || ||||||| ||||||| |||| || || || ||| | Sbjct 123756 GGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAA 123697 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || ||||| ||||| || || || || ||||| Sbjct 123696 CTTCAAGGGTGATGGTCTTTCCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383393107160