Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq255 118 2e-21 seq771 98.7 2e-15 >seq255 Length=939575 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| ||||| || |||||||||| ||||||||| | | ||| Sbjct 828050 CGAAGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTC 827991 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || || ||||| || || || || || ||||| | ||| ||||| || ||| ||| ||| Sbjct 827990 CTGCCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCT 827931 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||| || ||| || ||| | || |||| | |||||| || || Sbjct 827930 TCTTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAAT 827871 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||||||||| || || || Sbjct 827870 GTAATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTG 827833 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || || || || || || || | ||||| || | | || Sbjct 827594 CGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTT 827535 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||||||||||| || || ||||| | ||||||||||| || ||| ||| Sbjct 827534 CTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCT 827475 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||| || ||| | || || | | ||| || || | Sbjct 827474 TCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGG 827415 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || |||||||| || || Sbjct 827414 GTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTG 827377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || |||||| ||||||||||||| || | |||||||||| | |||||| Sbjct 827503 ATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACGCTTTCCGATTACAATATTCAGAAA 827562 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || || ||||| | |||||||||||||| Sbjct 827563 GAATCAACGCTTCATTTGGTTTTGAGACTTCG 827594 >seq771 Length=410761 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| || ||||| | || || | ||||||||||||||||| || ||||||| Sbjct 282888 CCTTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 282947 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||| || |||||| || ||||| || || ||||| |||||| || Sbjct 282948 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTT 283007 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | || || | | || || || | ||||| ||||| ||||| || || ||||||| Sbjct 283008 CTATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAA 283067 Query 199620 AAATTTG 199626 | || || Sbjct 283068 AGATCTG 283074 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||| ||||| | || || | ||||||||||||||||| || |||||| Sbjct 280040 CCTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAG 280099 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || |||||||| || |||||| || ||||| || || ||||| ||| || | Sbjct 280100 ATAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTT 280159 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | || || | | || || || | ||||| ||||| ||||| || || ||||| Sbjct 280160 TCAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACG 280219 Query 199619 AAAATTTG 199626 || || || Sbjct 280220 AAGATCTG 280227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178891752652392