Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq188 95.1 1e-14 seq255 93.3 5e-14 seq771 86.0 7e-12 >seq188 Length=1630868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||||||||||||||| || ||||| || | || || || ||||| || || || Sbjct 124522 TCTTTTTGGATATTGTAGTCTGAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAA 124463 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | ||| ||||| || || ||| | | Sbjct 124462 ATCAACCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTT 124403 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | ||||| ||||| || || | |||||||||| Sbjct 124402 TCTATCGTGTCAGACGCCTCAACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACA 124343 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 124342 AAGATCTGCATT 124331 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || ||||| || || ||||| || || |||||||| |||| || Sbjct 124084 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCA 124025 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| | ||||||||| | || | | || ||||| Sbjct 124024 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 123965 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||| | | | | ||||||| | || || || | ||||| |||||| Sbjct 123964 ATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTG 123905 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||||||||||||||| |||||| Sbjct 123904 CCAGTTAACGTTTTAACAAAGATCTGCATT 123875 >seq255 Length=939575 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | | ||| |||| ||| | || || || || |||||||| |||| Sbjct 827602 TGCCTCCGCGAAGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGG 827543 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || ||||||||||| || || ||||| ||||||||||| | | Sbjct 827542 AAAGCGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTG 827483 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||||| | | | || ||| | ||| | Sbjct 827482 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAA 827423 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||| ||||| || || || || || |||||||| ||||| Sbjct 827422 CCTCGAGGGTGATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| || || | |||| ||||| || || || || || Sbjct 828020 TCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTGCCGTCTTCGAGTTGTTTACCAGCAAAG 827961 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| || | || | || || ||||| || || ||||| | Sbjct 827960 ATCAAACGTTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTT 827901 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || | ||| || || | || |||||||| || ||||| ||||| || Sbjct 827900 TCAATCGTATCTGAAGCTTCTACTTCTAATGTAATGGTTTTCCCAGTCAGAGTTTTCACG 827841 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 827840 AAGATCTGCAT 827830 >seq771 Length=410761 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| |||||||| |||||||||| || || | || || ||||||||||| ||||| | Sbjct 282888 CCTTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 282947 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||| || || | || | | ||||| || |||||| ||| | | Sbjct 282948 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTT 283007 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| | || || || | |||||||| |||||||| || || || |||| Sbjct 283008 CTATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAA 283067 Query 46584 AGATTTGCATTT 46595 |||| ||||||| Sbjct 283068 AGATCTGCATTT 283079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224438611520