Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq211 152 5e-32 seq255 107 2e-18 seq188 96.9 3e-15 >seq211 Length=255845 Score = 152 bits (168), Expect = 5e-32 Identities = 297/436 (68%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || |||||||| | |||||||||||| || | || ||||||| || ||||| | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | |||||||| || || |||||||| || ||||||| || || || || ||||| | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG-GCGATCCAGCGCAGCGCCCATTCG 133095 | | || || || | || || ||| | | || | ||||| | ||||| | | Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTG-TGTCATGCGAAATCCAATTTAAGGCCCAATTG 252046 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCC 133155 || |||| ||||| || | | |||||||| || || | | ||||||| Sbjct 252045 GCTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCG 251986 Query 133156 GAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 | || | | | |||| || ||| ||||||||||| |||||||| || || || Sbjct 251985 GCATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATT 251926 Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGC 133275 || |||||||| || || |||||||| || || || || ||||||||| ||| || Sbjct 251925 GCTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGT 251866 Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335 || || ||||| || ||||| || || || || || ||||| |||| || || Sbjct 251865 TCTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGAT 251806 Query 133336 ATGAAATGGCGCTCGT 133351 || ||||| || |||| Sbjct 251805 ATAAAATGACGTTCGT 251790 >seq255 Length=939575 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||| ||||| | || || || || | Sbjct 828224 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAAACTATCACTCTGGAAGTTGAAGCTTCG 828283 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||| | | |||| ||||| | |||||||| || || ||| | || || Sbjct 828284 GATACGATTGAAAATG-TCAAAGCTAAAATTCAGGACAAAGAAGGCATCCCCCCTGATCA 828342 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || |||| ||| |||||||||||||| |||| | || || || || || Sbjct 828343 ACAACGTCTAATTTTCGCCGGCAAACAGCTGGAGGACGGAAGGACGCTTTCTGATTATAA 828402 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || || ||||| || |||||||| || || Sbjct 828403 TATTCAGAAAGAATCAACCCTTCACTTGGTACTTCGTTTGAGGGGTGG 828450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || ||||||||||| |||| ||||| || | Sbjct 827602 ATGCAGATTTTTGTTAAGACCTTAACAGGAAAAACCATCACTCTCGAAGTCGAAGCTTCA 827661 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||||| || |||| || ||||| || ||||| | || || Sbjct 827662 GATACTATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGCATTCCTCCAGATCAG 827721 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| || || |||| | || ||| |||||||||| Sbjct 827722 CAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAAC 827781 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || || || || || || || Sbjct 827782 ATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCG 827816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || |||||||| || | || || || || | Sbjct 827830 ATGCAGATCTTCGTGAAAACTCTGACTGGGAAAACCATTACATTAGAAGTAGAAGCTTCA 827889 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||| | | || | ||||| | |||||||| || ||||| | || || Sbjct 827890 GATACGATTGAAAATG-TCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 827948 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || || ||||| || || |||| | || ||| ||||||||| Sbjct 827949 GCAACGTTTGATCTTTGCTGGTAAACAACTCGAAGACGGCAGGACACTCTCCGACTACAA 828008 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| | || || || || || || || Sbjct 828009 CATCCAAAAGGAATCTACTCTTCACTTAGTTCTTCG 828044 >seq188 Length=1630868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || |||||| | || || ||||| |||||| | || || ||||| | Sbjct 124331 AATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACGATCACCCTTGAAGTTGAGGCGTC 124390 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | || | ||||| | |||||||||||||| || | ||||| Sbjct 124391 TGACACGATAGAAAATGTGAAGGCTAAAATTCAAGACAAAGAGGGAATCCCACCAGACCA 124450 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || || || || || || | || || ||| |||||||| Sbjct 124451 GCAGAGGTTGATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTCTCAGACTACAA 124510 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||| | || || || || || || || Sbjct 124511 TATCCAAAAAGAATCAACTCTTCACTTAGTTCTTCG 124546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160445731840