Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq255 172 1e-37 seq188 145 2e-29 seq771 118 2e-21 >seq255 Length=939575 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | ||||| || || ||||| |||||||||||||||| ||| ||||| Sbjct 827591 AGTCTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTT 827532 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| | ||| || ||||| || |||||||||||| Sbjct 827531 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCT 827472 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || |||||| || ||||| || || ||| ||| || || ||||| Sbjct 827471 TTGTCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTG 827412 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | || || || || | ||||| Sbjct 827411 ATTGTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| | ||||||||| || || ||||| || ||||| |||| || || || Sbjct 828047 AGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTG 827988 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || |||||||| || ||||| || ||||| | ||||| || |||||||||||||||||| Sbjct 827987 CCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCT 827928 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| |||||| || ||||| || || ||| ||| ||||| | ||| Sbjct 827927 TTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTATCTGAAGCTTCTACTTCTAATGTA 827868 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || |||| |||||| ||||| | ||||| Sbjct 827867 ATGGTTTTCCCAGTCAGAGTTTTCACGAAGATCTGCAT 827830 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||| |||||||| ||||| | ||| || || || || || ||||| Sbjct 828427 GTGAAGGGTTGATTCTTTCTGAATATTATAATCAGAAAGCGTCCTTCCGTCCTCCAGCTG 828368 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || || |||||||| || || || |||||||||||||| |||||||| Sbjct 828367 TTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGGGGATGCCTTCTTTGTCCTGAATTTT 828308 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || ||||| || |||||| ||| ||||| || || | || || || || Sbjct 828307 AGCTTTGACATTTTCAATCGTATCCGAAGCTTCAACTTCCAGAGTGATAGTTTTCCCAGT 828248 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 828247 GAGAGTCTTCACGAAGATCTGCAT 828224 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| | ||||||||| || || ||||| || ||||| |||| || || || Sbjct 827819 AGTCGAAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAGAGTGTCCTG 827760 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || |||||||| || ||||| || ||||| | ||||| || |||||||||||||||||| Sbjct 827759 CCGTCTTCGAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCTTCT 827700 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || || || || ||||| || || ||| ||| ||||| || || Sbjct 827699 TTATCTTGGATCTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCGACTTCGAGAGTG 827640 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| || || || || || | ||||| Sbjct 827639 ATGGTTTTTCCTGTTAAGGTCTTAACAAAAATCTGCAT 827602 >seq188 Length=1630868 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || ||||| |||||||| | |||||| | |||||||| Sbjct 123172 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123113 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || || ||||| || || ||||| || |||||| Sbjct 123112 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123053 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||| ||||| || ||| ||||||||||| | |||||| Sbjct 123052 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 122993 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||| || ||||| | |||||| Sbjct 122992 CCTGTAAGAGTCTTGACGAATATCTGCATT 122963 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || ||||| |||||||| | |||||| | |||||||| Sbjct 123400 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123341 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || || ||||| || || ||||| || |||||| Sbjct 123340 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123281 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||| ||||| || ||| ||||||||||| | |||||| Sbjct 123280 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123221 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||| || ||||| | |||||| Sbjct 123220 CCTGTAAGAGTCTTGACGAATATCTGCATT 123191 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || ||||| |||||||| | |||||| | |||||||| Sbjct 123628 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123569 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || || ||||| || || ||||| || |||||| Sbjct 123568 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123509 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||| ||||| || ||| ||||||||||| | |||||| Sbjct 123508 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123449 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||| || ||||| | |||||| Sbjct 123448 CCTGTAAGAGTCTTGACGAATATCTGCATT 123419 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || ||||| |||||||| | |||||| | || ||||| Sbjct 124084 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCA 124025 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || |||||||| || || ||||||||||||||| Sbjct 124024 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 123965 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || || ||||| || || ||||||||||| | ||| || Sbjct 123964 ATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTG 123905 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| || || | |||||| Sbjct 123904 CCAGTTAACGTTTTAACAAAGATCTGCATT 123875 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || |||| | ||| | ||||||||| || |||||||| |||||||| || | ||||| Sbjct 124552 CTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCTGAGAGAGTA 124493 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| || ||||| || || || || | | || |||||||| || || || Sbjct 124492 CGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATTCCC 124433 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 ||||||||||||||||| ||| || || || || ||||| || || ||||||||| Sbjct 124432 TCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCAACTTCAAGG 124373 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||| || || || || ||||| || || | |||||| Sbjct 124372 GTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCATT 124331 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || ||||| ||||||||||| || | | |||| ||||| || ||||| Sbjct 124306 TGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGCCATCCTCAAGCTGT 124247 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | || || ||||| || || ||||| || ||||||||||| Sbjct 124246 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTG 124187 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| ||||| || ||| ||||||||||| | ||||||||||| Sbjct 124186 GCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTA 124127 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 124126 AGAGTCTTGACGAATATCTGCATT 124103 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| || || ||||| |||||||| | |||||| | |||||||| Sbjct 122944 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 122885 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| | | || || ||||| || || ||||| || |||||| Sbjct 122884 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 122825 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||| || || || || || |||||||| | ||||| Sbjct 122824 ATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTC 122765 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 122764 CCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || ||||| |||||||| || || | | |||| ||||| || ||||| Sbjct 123850 TGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCCTCAAGCTGT 123791 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | || || ||||| || || ||||| || ||||||||||| Sbjct 123790 TTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTG 123731 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| ||||| || ||| ||||||||||| | ||||||||||| Sbjct 123730 GCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTTCCTGTA 123671 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 123670 AGAGTCTTGACGAATATCTGCATT 123647 >seq771 Length=410761 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || || || || |||| | || | |||||||| |||||||| || ||||||| Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 |||| || ||||| || ||||| || ||||| |||||||| || || ||| || || | Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTT 280160 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| || || ||| || || |||||||| | ||||| || || | || || |||| Sbjct 280161 CAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGA 280220 Query 195131 ACACTTGCATTTATGGTTACTTGGTGGT 195158 | | |||||| | | || ||||||| Sbjct 280221 AGATCTGCATTGTGGCTCACCTGGTGGT 280248 Score = 104 bits (114), Expect = 5e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || ||||| || |||| | || | |||||||| |||||||| || ||||||||| Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || ||||| || ||||| || ||||| || ||||| || || ||| || || || Sbjct 282950 AGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCT 283009 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || || || ||| || || |||||||| | ||||| || || | || || || || Sbjct 283010 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAG 283069 Query 195133 ACTTGCATTT 195142 | ||||||| Sbjct 283070 ATCTGCATTT 283079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109453510699592