Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq255 131 1e-25 seq188 107 1e-18 seq771 82.4 5e-11 >seq255 Length=939575 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| |||||||| | | |||||||||| || |||||||||||| ||||| || | Sbjct 828452 TTCCACCCCTCAAACGAAGTACCAAGTGAAGGGTTGATTCTTTCTGAATATTATAATCAG 828393 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | | | | || ||||||||||| ||||| || ||||| ||||| || || | | Sbjct 828392 AAAGCGTCCTTCCGTCCTCCAGCTGTTTGCCGGCGAAAATTAGACGTTGTTGATCAGGGG 828333 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||| || |||||| | | |||| || || |||| Sbjct 828332 GGATGCCTTCTTTGTCCTGAATTTTAGCTTTGACATTTTCAATCGTATCCGAAGCTTCAA 828273 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || || ||||| || |||||||||||||| |||||||||||| Sbjct 828272 CTTCCAGAGTGATAGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCATA 828223 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||||||||| |||| || |||||||||||| || || || ||||| ||| | || Sbjct 827588 CTCAAAACCAAATGAAGCGTTGATTCTTTCTGAATATTGTAATCGGAAAGCGTTCTTCCA 827529 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || || ||||| || | ||| |||||||| | || | || || ||| Sbjct 827528 TCTTCCAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGTGGAATGCCTTCTTTG 827469 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| ||||| | | || | || || ||||| |||| ||| || Sbjct 827468 TCCTGGATCTTGGCCTTGACATTTTCAATTGTATCGGAAGCTTCAACCTCGAGGGTGATT 827409 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || || |||||||||||||||||||| Sbjct 827408 GTTTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 827374 >seq188 Length=1630868 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || |||||||||||| |||||||| || | |||| |||| || Sbjct 123856 ACCAAATGAAGAGTAGATTCTTTCTGAATATTATAGTCAGATAATGTTCGGCCATCCTCA 123797 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| ||||| || | | ||||| ||| | || | || ||||| || | Sbjct 123796 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123737 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| || | | |||| || ||| ||||| || | ||| ||||| ||| Sbjct 123736 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123677 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || || |||||||| Sbjct 123676 CCTGTAAGAGTCTTGACGAATATCTGCAT 123648 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || |||||||||||| || ||||| || | |||| |||| || Sbjct 124312 ACCAAATGAAGAGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTTCGGCCATCCTCA 124253 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| ||||| || | | ||||| ||| | || | || ||||| || | Sbjct 124252 AGCTGTTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 124193 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| || | | |||| || ||| ||||| || | ||| ||||| ||| Sbjct 124192 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 124133 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || || |||||||| Sbjct 124132 CCTGTAAGAGTCTTGACGAATATCTGCAT 124104 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 ||||| ||||| | | | ||| ||||||| || |||||| || || || ||||| Sbjct 124561 TTTCCACCCCTAAGTCGAAGAACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAGTCT 124502 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || || | ||| |||| || || || ||||| ||||| || | | ||||||||| | Sbjct 124501 GAGAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGT 124442 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||| ||||| ||| || || || | |||||| ||| |||||| Sbjct 124441 GGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCTATCGTGTCAGACGCCTCA 124382 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| || ||||| || || | || || |||||||||||||| Sbjct 124381 ACTTCAAGGGTGATCGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 124332 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||||||||| || || ||||| | ||| |||| || Sbjct 122944 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 122885 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || | | ||||| ||| | || | || ||||| || | Sbjct 122884 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 122825 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| || | | |||| ||| |||||||| || | ||| ||||| || Sbjct 122824 ATTTTGGCTTTTACATTTTCAATCGTATCAGATGCCTCAACCTCAAGGGTGATGGTCTTC 122765 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||||||| || |||||||| Sbjct 122764 CCAGTCAAAGTCTTCACGAAAATCTGCAT 122736 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||||||||| || || ||||| | ||| |||| || Sbjct 123172 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123113 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || | | ||||| ||| | || | || ||||| || | Sbjct 123112 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123053 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| || | | |||| || ||| ||||| || | ||| ||||| ||| Sbjct 123052 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 122993 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || || |||||||| Sbjct 122992 CCTGTAAGAGTCTTGACGAATATCTGCAT 122964 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||||||||| || || ||||| | ||| |||| || Sbjct 123400 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123341 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || | | ||||| ||| | || | || ||||| || | Sbjct 123340 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123281 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| || | | |||| || ||| ||||| || | ||| ||||| ||| Sbjct 123280 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123221 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || || |||||||| Sbjct 123220 CCTGTAAGAGTCTTGACGAATATCTGCAT 123192 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||||||||| || || ||||| | ||| |||| || Sbjct 123628 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCA 123569 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || | | ||||| ||| | || | || ||||| || | Sbjct 123568 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGA 123509 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| || | | |||| || ||| ||||| || | ||| ||||| ||| Sbjct 123508 ATTTTGGCTTTTACATTTTCAATCGTGTCTGAGGCTTCAACTTCAAGGGTGATGGTCTTT 123449 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || || |||||||| Sbjct 123448 CCTGTAAGAGTCTTGACGAATATCTGCAT 123420 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||||||||| || || ||||| | || | || || Sbjct 124084 ACCAGATGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCA 124025 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || | | ||||||||| | || | || || ||||| | Sbjct 124024 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCTTGA 123965 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || || | |||||| || |||||||| || | ||| || ||||| Sbjct 123964 ATTTTAGCCTTCACATTTTCTATCGTGTCGGATGCCTCAACTTCAAGGGTGATCGTTTTG 123905 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || |||||||||||||| Sbjct 123904 CCAGTTAACGTTTTAACAAAGATCTGCAT 123876 >seq771 Length=410761 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| ||||||||||| || | | || |||| |||||||| || || || || | Sbjct 280041 CTTTCTGGATGTTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGA 280100 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || || || || | || | || |||||||| ||||| || || | Sbjct 280101 TAAGACGCTGTTGATCCGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTTACATTTT 280160 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || |||||||| || | ||| || || || ||||| || |||||||| | Sbjct 280161 CAATAGTATCGGAAGCCTCAACCTCAAGGGTGATAGTCTTGCCCGTTAGGGTCTTCACGA 280220 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 280221 AGATCTGCAT 280230 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| || |||||||| || | | || |||| |||||||| || || || || || Sbjct 282890 TTCTGGATATTATAGTCGGATAATGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATA 282949 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || || || || | || | || ||||| || ||||| || || | || Sbjct 282950 AGACGCTGTTGATCCGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACATTTTCT 283009 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || |||||||| || | ||| ||||| || ||||| || |||||||||||| Sbjct 283010 ATAGTATCGGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCCGTTAGGGTCTTCACAAAG 283069 Query 34974 ATCTGCAT 34981 |||||||| Sbjct 283070 ATCTGCAT 283077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625782011328