Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq502 93.3 6e-14 seq588 86.0 8e-12 >seq502 Length=146425 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 104867 GAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACT---TGTTAAATGAAATTGGT 104923 |||||||||||| | || | ||| | || ||| |||| ||| || | || ||| Sbjct 100118 GAATTATTATGGTTTATCAGAGGATCGACTAATGCTAAAGAACTGTCAAGTAAA---GGT 100062 Query 104924 GTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTCACTTT 104983 ||| | | ||| ||| ||| |||||||| | ||| || |||| ||||| | | | Sbjct 100061 GTTCATATTTGGGATGCAAATAGTTCACGTGAATTTCTAAATTCCTGTGGCTATGATGAC 100002 Query 104984 CGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAA 105043 | | ||||||||| | || || ||||||||||||||||| || || ||| || || Sbjct 100001 AGGGAGGAAGGTGATCTCGGTCCTGTTTATGGATTTCAATGGCGAAATTTTGGTGCACAG 99942 Query 105044 TATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGA 105084 |||||||| | || | || || ||| | || ||||||| ||| Sbjct 99941 TATATCGA-TATGAACACTGATTATTCAGGGCAAGGTAGAGA 99901 >seq588 Length=681919 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 126591 CGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTGTGG 126649 || |||||| ||||||| ||||||||| ||| || |||| | |||| || |||||||| Sbjct 384228 CGCATACCACAAATTGGCGACAAATTTGCTTCGCGACATGGAC-AAAAGGGTACTTGTGG 384286 Query 126650 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATATTAT 126709 ||| || ||||||||| ||||| ||| | |||| | || ||||||||||| Sbjct 384287 TATACAATACAGACAAGAAGACATGCCATTTTCTTGTGAAGGTCTTACACCCGATATTAT 384346 Query 126710 AATTAATCCAAATTGTATACCGTCAAGAATGACCAT 126745 |||||||| || ||| || || | ||||| || Sbjct 384347 TATTAATCCTCATGCTATTCCATCTCGTATGACAAT 384382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658386937440960