Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq648 113 5e-20 seq1554 109 6e-19 seq211 109 6e-19 seq295 96.9 4e-15 >seq648 Length=307961 Score = 113 bits (124), Expect = 5e-20 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||||||| |||| | |||||| || ||| ||||| || |||| |||| || | Sbjct 3078 TAACAAACATATTCACTGCTATCGAGGCTGAGTTACAGACTGCTATTTCATCACAATCGG 3137 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 ||||||||||||| |||||| | | ||| || | | ||||||| ||||||||||| |||| Sbjct 3138 TATATTGTATTATATCAGCAGAGAAATTTCCTCCTCTGATAGTCCCCAAATTTTGCTGAT 3197 Query 47983 T--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 | ||| ||||| || || || |||||| ||||| ||| ||||||| || Sbjct 3198 TGGATTTCCG--ATTACAATGATCTTTATACAGCATACAAGGTAATCCTGTTTCTACTTG 3255 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGC 48073 ||||| | || | | ||| ||| ||||||| Sbjct 3256 AGATTTTAATATGGCATACCATACATTCCTAGC 3288 >seq1554 Length=169980 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677 ||||| || || ||| |||| || ||| || | || || || |||||||| || | Sbjct 3004 GTTGGTGACGCGTGAGTAAAGTATCGCTCAGACATTAAGTTGTAAGTTTCAATTACTTTA 2945 Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 |||| ||| || ||| || | | || || | ||||||||||| |||||| ||||| Sbjct 2944 TCTACATCATTTTCATGGATGGCAACAGCCACTCTCATTAACATATGTTGAGGCCTTTCG 2885 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 ||| ||| || |||||||| | ||| | |||| ||||||||||||||||| || Sbjct 2884 GCAACCTTGCCATCTATTTTCAGCAAATAGCTTCTTTCTAATGTTTTAAAACCAAAGTAA 2825 Query 48798 TTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 ||||| |||||| ||||| || |||| ||||| Sbjct 2824 TTGTAGCCAAAGTCACGATCATAAACTATTGCAGAATT 2787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 ||| |||||||||| ||||||||||||||| | || | | || |||||||| || Sbjct 4679 ATGTGGATTAACAACTTGAAATTCTCCAGACAAAACGCGCCTCACGTACATATTACTCGT 4620 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 || || || || ||||| ||||| || |||||||| ||||| || || || ||||| | Sbjct 4619 GTAAGGCTCAATTGATTCGTTATTGCCCAAAATTTGTGCAGTCGAGGCCGTCGGCATTGG 4560 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTT 47465 || | || ||| ||| | || |||| |||| Sbjct 4559 CGCCAATAGTAAAGAATTCCGCACACCATGTTTT 4526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| |||||| || | ||| | | || || | |||||||||| Sbjct 5027 TCCAACCATAGAAGTGCATAGAGGTGAGTTTTTCAGTTGTTGGCTCAGCCATATGAATAT 4968 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | |||||||| ||| |||||||| || || | ||| | ||||| | |||| | | Sbjct 4967 TTAGAGATTGGGACTGGTCAATAAAGGCCCCACGGTCAACAGCCATTTTCAAAACGATCT 4908 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 |||||| ||| |||||||| |||||||| | ||| | || ||||||| Sbjct 4907 TTTGTGATATTTCCCATACGGTTTTATATAAGGCTTTTAAATCATCTGGGA 4857 >seq211 Length=255845 Score = 109 bits (120), Expect = 6e-19 Identities = 292/445 (66%), Gaps = 11/445 (2%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || ||||| || ||||| | |||||||| | || | ||| | Sbjct 252224 CCTCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCT 252165 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || |||| ||| || ||| ||||| || |||||||| ||||| || | Sbjct 252164 TCAGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACG 252105 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| | | |||| || || | || | || |||||| || | ||||||| | Sbjct 252104 CAATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAATTGG 252045 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTG 19222 | || || || || || | |||| || | ||| || ||| | | ||| || | Sbjct 252044 CTTTTTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCGG 251985 Query 19223 TATCTTTAACATATGCATCTATCAATAAACTG----TACATTTCTGAATGAATATTTTCT 19278 || || ||| || | | |||| | ||||||||||| || | |||||| Sbjct 251984 CATT----ACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCA 251929 Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338 || || || ||||| || || || || | |||||| |||| || ||||| || || Sbjct 251928 ATTGCTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAAC 251869 Query 19339 CTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGT 19398 | ||| || | ||| ||||| || || ||||| ||||||||||| || |||||||| Sbjct 251868 CGTTCTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGG 251809 Query 19399 TTAATAAAAT---GTTTTTCATCTG 19420 ||||||| ||| ||||||| Sbjct 251808 GATATAAAATGACGTTCGTCATCTG 251784 >seq295 Length=3859974 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| || |||||||| ||| ||| | || ||| || | |||| || | |||| Sbjct 1466992 TTATAAGTCTCAATAACTTTATCAATAGCATCTTCATGGATTGCAATAGCAACTCTCATT 1467051 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||||| || ||||||||||| | |||| ||| ||||||| |||||| || |||| Sbjct 1467052 ATCATATGCTGGGGTCTTTCAACGACTTTGCCATTGATTTTCAGAAGATAATTTTCTTCC 1467111 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCG 48812 | || |||||| ||||| ||||| || ||||||| Sbjct 1467112 AGTGATTTAAAGCCAAAGTAGTTATAATCAAAGTCG 1467147 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 47279 CCAAAGTTTTCGTTCAGTTAATGTTTTTAAAAGATGAGGATTAACAATTTGAAATTCTCC 47338 ||| || |||| ||||| | | | || ||||||||||| | | |||||||||| Sbjct 1465144 CCAGAGATTTCTCTCAGTCAGATCTCTCAACAGATGAGGATTTATGAATTGAAATTCTTT 1465203 Query 47339 AGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCC 47398 ||| | | | | | ||| || || ||| |||| ||||| || ||||| ||||||| Sbjct 1465204 AGAGAATGTTTTCCTTACATACATGTTGCTTATATAAGGTTCAATTGATTCGCTATTTCC 1465263 Query 47399 AAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAA 47436 ||||||| |||||||| | |||||| | ||||||| Sbjct 1465264 TAAAATTTCAGCAGTTGGCGATGTAGGAGTTGATGCAA 1465301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094915912640