Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq211 127 2e-24 seq248 91.5 2e-13 >seq211 Length=255845 Score = 127 bits (140), Expect = 2e-24 Identities = 300/450 (67%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || ||||| || || || | ||| ||||| | ||| | ||| || Sbjct 252222 TCATCTCTGGAAATTAATTCGTTGCTGAATGTAAGTCCAGGCATGATACCACGTTTCTTC 252163 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| || || || ||| ||| ||||| || ||||| || ||||| || || Sbjct 252162 AGCCAAAAGATAGCAGCGAAACTACCACTGAAGAAGATTCCTTCTACCGCTGCGAACGCA 252103 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 | | |||| | ||||||| | | || |||||||| ||| | ||||| || | Sbjct 252102 ATCACACGTTCTGCAAAAGTTGCTGTGTCATGCGAAATCCAATTTAAGGCCCAAT-TGGC 252044 Query 37380 TTTAATTTAACA---CATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCA 37436 ||| |||| || || || | || || || || |||||||| | | ||||| Sbjct 252043 TTT--TTTAGCAACGCAGGGAAGATTCTCGATGGCATTGAAGAGAAAATCCCTCTCTTCG 251986 Query 37437 CTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATA 37496 || | || | || | || || | ||||||||| ||||| | ||||||||| Sbjct 251985 GCATTACTGATGAATGTGTTTATAAGGAGGGAATACATTTCTGAGTGTACATTTTCAATT 251926 Query 37497 GCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTC 37556 ||||| ||||||||||| || |||| ||||| | || ||| || || | | |||| Sbjct 251925 GCTATTTGAAAACCATAGAAGCACCGTGCTTCCGTTACTTGGACTTCTTGACTGAACCGT 251866 Query 37557 TTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTT 37616 | ||| || ||||| || || ||||| |||||||| || || | |||| | Sbjct 251865 TCTACTAGATTCTCATTGACAATACCATCTGATGCTGCAAAAAACGCCAATACATGGGAT 251806 Query 37617 ATAAAATGTCTTTCATCATTTGATAATTTT 37646 |||||||| | ||| |||| || ||| ||| Sbjct 251805 ATAAAATGACGTTCGTCATCTGTTAACTTT 251776 >seq248 Length=3919243 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 153918 CCATATACAAGAGTAAACCATTCAAAATTTATGGTTACTGATATTGATGCATATATTGGT 153977 |||| ||| ||||| || ||| |||| |||||||||||| |||| ||||||||||||| Sbjct 1024097 CCATTTACTAGAGTTAATCATAATAAATATATGGTTACTGACATTGCTGCATATATTGGT 1024038 Query 153978 ACATCAAATTGGAGTGGAAATTACTTTGTTGATACAGCCGGTG 154020 || |||||| ||| ||||||| |||||||||| |||| Sbjct 1024037 ACGAGCAATTGGTCTGGTGATTACTTCATTGATACAGCTGGTG 1023995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592302169775040