Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_018281.1 Length=43581 Score E Sequences producing significant alignments: (Bits) Value seq1517 95.1 3e-15 >seq1517 Length=17455 Score = 95.1 bits (104), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 36923 AGAAGTTGAAAAGATTTCTCGTGATTTAAAAATTATAGCTAAAGAAACAGGTTGTATCA- 36981 ||||||| ||| ||||||||| |||||||||| | || | |||| | | ||| || Sbjct 11932 AGAAGTTTCAAATATTTCTCGTAGTTTAAAAATTTTGGCAAGAGAATTAAGA-GTACCAA 11990 Query 36982 TTATCGCACTATCTCAATTAAGTAGAGGCGTAGAAAGTCGTAGTGATAAACGTCCGATGA 37041 || | |||| |||||| ||| || || || ||| || |||||||| | | Sbjct 11991 TTGTTTGTTTATCACAATTATCAAGAATGGTGGAGAGACGTGAAGAAAAACGTCCTTTAA 12050 Query 37042 TGTCTGATTTAAGAGAAGCAGGAGGAATTGAGCAAGACGCGAATATGATTTTCTTCTTAT 37101 ||||||||||| | || |||| | ||||| ||||| || || | ||| | || |||| Sbjct 12051 TGTCTGATTTACGTGAGTCAGGGGCTATTGAACAAGATGCTGATGTAATTATGTTTTTAT 12110 Query 37102 ACCGTGATGATTATTA 37117 | |||||||||||||| Sbjct 12111 ATCGTGATGATTATTA 12126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139334330443216